Query= MSMg01no360_i13.b1 MSMg01no360_i13.b1 CHROMAT_FILE:
MSMg01no360_i13.b1 PHD_FILE: MSMg01no360_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:18 2005
(544 letters)
>mm_chr11_83348810_83349751
Length = 942
Score = 994 bits (514), Expect = 0.0
Identities = 536/546 (98%), Gaps = 8/546 (1%)
Strand = Plus / Minus
Query: 1 agtaaggaagtaaacgctggagcctggacatttggggggggcaggtttctaagtttctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agtaaggaagtaaacgctggagcctggacatttggggggggcaggtttctaagtttctac 488
Query: 61 gtagagccagaaataggccattttctgattgcctccacttgatcatcctgggtatcctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtagagccagaaataggccattttctgattgcctccacttgatcatcctgggtatcctag 428
Query: 121 aactgggtgttctcagcccaatttccatgagagaaaccgaggagtcgatttaaccatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aactgggtgttctcagcccaatttccatgagagaaaccgaggagtcgatttaaccatctg 368
Query: 181 tccaaaggcacagagaccgcaagtgctgactgatttcaaatgcaagtcttccttgcccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tccaaaggcacagagaccgcaagtgctgactgatttcaaatgcaagtcttccttgcccca 308
Query: 241 tcagacttccttctggggggtgggggggaagactgcagaactgaggggtcacgctctggc 300
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 307 tcagacttccttctgggggg--ggggggaagactgcagaactgaggggtcatgctctggc 250
Query: 301 aataagctttcctagagaataaaggataaggaatttcatgagggatatgaaacaagaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aataagctttcctagagaataaaggataaggaatttcatgagggatatgaaacaagaaac 190
Query: 361 aaacaagcaaacaaaaaa-aaataa-taaagacaaaaaggaatcctcaaaccaatatgaa 418
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 189 aaacaagcaaacaaaaaataaataaataaagacaaaaaggaatcctcaaaccaatatgaa 130
Query: 419 gaagaaaataaaaatgcattcctctcatagaagaggaggcctaaaattatctgtcaacaa 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 129 gaagaaaataaaaatgcattcctctcatagaagagggggcctaaaattatctgtcaacaa 70
Query: 479 acacttattgatcacgtgcttcccccaggcctcacactcgcaccaccttgtgggggctcc 538
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 acact----gatcacgtgcttcccccaggcctcacactcgcaccaccttgtgggggctcc 14
Query: 539 cctgtg 544
||||||
Sbjct: 13 cctgtg 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 942
Length adjustment: 10
Effective length of query: 534
Effective length of database: 932
Effective search space: 497688
Effective search space used: 497688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_i13.g1 MSMg01no360_i13.g1 CHROMAT_FILE:
MSMg01no360_i13.g1 PHD_FILE: MSMg01no360_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:18 2005
(434 letters)
>mm_chr11_83152182_83153015
Length = 834
Score = 797 bits (412), Expect = 0.0
Identities = 430/436 (98%), Gaps = 2/436 (0%)
Strand = Plus / Plus
Query: 1 cagtaaggatccccagtgttgatgtgttcttcagttaccttcctttccttctactctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cagtaaggatccccagtgttgatgtgttcttcagttaccttcctttccttctactctcct 258
Query: 61 ggcttttgtttgttt-gtttt-ttaatattttccccgttgtccaggttactgttcactcg 118
||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 259 ggcttttgtttgtttggttttcttaatgttttccccattgtccaggttactgttcactcg 318
Query: 119 tttaacagagttatgtggaagatagagatcgcttgctcagtgcagagctcttgactagcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttaacagagttatgtggaagatagagatcgcttgctcagtgcagagctcttgactagcc 378
Query: 179 agtgggaggcccgaggtttgctcctagcaaaacacacaaaaccaaacccaaaactgtttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agtgggaggcccgaggtttgctcctagcaaaacacacaaaaccaaacccaaaactgtttt 438
Query: 239 caatgtgtttgctaatgaataaaatctggtatattcctagaattgttaatgctgatatac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caatgtgtttgctaatgaataaaatctggtatattcctagaattgttaatgctgatatac 498
Query: 299 attgtatcatttagcctctagtagctttagcagagtcagtgcctgtctgactcaggcaat 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 499 attgtatcatttagcctctagtagctttagcagagtcagtgcctgtctgactcaggcagt 558
Query: 359 gtacttgtatgtttccttttctgtgttgagatagtgttattggattgacttaagtgttga 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 559 gtacttgtatgtttccttttctgtgttgagatagtgttattggattaacttaagtgttga 618
Query: 419 tgtttctttccctagc 434
||||||||||||||||
Sbjct: 619 tgtttctttccctagc 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
