Query= MSMg01no360_j09.b1 MSMg01no360_j09.b1 CHROMAT_FILE:
MSMg01no360_j09.b1 PHD_FILE: MSMg01no360_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:22 2005
(423 letters)
>mm_chr11_63220861_63221682
Length = 822
Score = 727 bits (376), Expect = 0.0
Identities = 409/422 (96%), Gaps = 5/422 (1%)
Strand = Plus / Plus
Query: 4 ggaattctaatgcattccgcccttcagtcatcaagattatggatccctccctcactctat 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaatgcatgcagcccttcagtcatcaagattatggatccctccctcactctat 263
Query: 64 accaaggagcagagacaagtcttaggctctggatagatgaggtggcagaaattggtatcc 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accaagaagcagagacaagtcttaggctctggatagatgaggtggcagaaattggtatcc 323
Query: 124 taagtccacatgtattaggtgccattgcctacattcctggcttgttttgttctgtgagat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taagtccacatgtattaggtgccattgcctacattcctggcttgttttgttctgtgagat 383
Query: 184 tcagcagaaatgcttcccaggacacattaccaaattcccacagctctgtaaagcactgat 243
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 tcagcagaaatgctttccaggacatattaccaaattcccacagctctgtaaagcactgat 443
Query: 244 ttgtgattttgaaaacaagaacatcagagaagttattt--gggtatgtgtgttagttatg 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 ttgtgattttgaaaacaagaacatcagagaagtta---aagggtatgtgtgttagttatg 500
Query: 302 gtgctgcacacctctcagcacttgggaaatagggatagaaggatcagaagtgcaaggcta 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 gtgctgcacacctctcagcacttgggaagtagggatagaaggatcagaagtgcaaggcta 560
Query: 362 gccttggctacacagcaaattagaggttaaggtgggcagcaggagacccttggtcaaaca 421
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gccttggctacacagaaaattagaggttaaggtgggcagcaggagagccttggtcaaaca 620
Query: 422 ac 423
||
Sbjct: 621 ac 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space: 336582
Effective search space used: 336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_j09.g1 MSMg01no360_j09.g1 CHROMAT_FILE:
MSMg01no360_j09.g1 PHD_FILE: MSMg01no360_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:22 2005
(411 letters)
>mm_chr11_63359593_63360403
Length = 811
Score = 719 bits (372), Expect = 0.0
Identities = 402/412 (97%), Gaps = 1/412 (0%)
Strand = Plus / Minus
Query: 1 agaagataacttttaggagatagctccctctttccatccttttatgggtttcagggatgg 60
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 720 agaagataacttttaggagatagcttcctctttccatccatttatgggtttcagggatgg 661
Query: 61 aactcagggcatcaggcttgcagacaaacc-tttattcatcgagacatcatgtgctggct 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 660 aactcagggcatcaggcttgcagacaaaccttttattcatcgagacatcatgtgctggct 601
Query: 120 gcaacaatcagctttacaaatgatacttatagaagtaactaaacagcataagggaaaggg 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gcagcaatcagctttacaaatgatacttatagaagtaactaaacagcataagggaaaggg 541
Query: 180 ttgccctgggttccacagagactgggagtccccatgagcaatgtgctttaggattagggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttgccctgggttccacagagactgggagtccccatgagcaatgtgctttaggattagggc 481
Query: 240 cctgatttgtctcatgagaggagcacctgtcagtaactgtgatgggaagcgttagtttgc 299
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cctgagctgtctcatgagaggagcacctgtcagtaactgtgatgggaagcgttagtttgc 421
Query: 300 attcttcagttccctgttgactgactacattacacccaagcaacacggctcccacacttg 359
|||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 420 attcttcagttccctgttgactgactgctttacacccaagcaacatggctcccacacttg 361
Query: 360 ctaatctgtggatttccactgaccgataattagcctagacagctagaattca 411
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 360 ctaatctgtggatttccactgacagataattagcctagacagctagaattca 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
