BAC Information

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BAC

Clone NameMSMg01-361C11
Chromosome11 (Build37)
Map Location 61,111,522 - 61,289,620
singlet/doubletdoublet
Overlap gene4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179
Upstream geneTom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2
Downstream geneMfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361C11.T7 (MSMg01no361_c11.b1)MSMg01-361C11.TJ (MSMg01no361_c11.g1)
ACCAG470156AG470157
length751781
length of high quality
(start - end)		628 (48 - 675)305 (72 - 376)
definitionCHROMAT_FILE: MSMg01no361_c11.b1 PHD_FILE: MSMg01no361_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:06 2005CHROMAT_FILE: MSMg01no361_c11.g1 PHD_FILE: MSMg01no361_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,288,997 - 61,289,620)(61,111,522 - 61,111,823)
sequence
NTTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGAATAAATGCTGTTACTTTTTCCTGACACCAGCTGTCTGGG
CTGGATTTATTATGATAGGAAGTCAAATGTTATTTAAATATGGATTATAT
TAAAATTGTTCTCTACTGTTATACTGCTGTTTTATACTATTGTATGACCA
TGGTGACCCTACAGCCAATAATAAGACACCAAGATCTTTTAGTATTTTAA
ATCATAGGCCTTAGCTAGGCAGACCCTAAAGTAACTCATCTAAGTTAACC
TGGCCATCTAAACCCAACCCACCGCATGGCTAACTATACCTTCCAGGCCT
GTACTCATGTCTGTCTCCTCTTGTGTCTCCTGGCAAAATAAGCCTTTCTC
TTTCTTCTTCCCAGAGACACTGTCTCCCTACCTGGAAGCGCTTCTTTCTT
CTACATCTTGCCCAGCCTTTAGTCTACAAAAAAATCCACATTCCAGTCTG
AACCAATCAGCAGCAGGACAATGCCTGATCCACCCTTTTGGGGTTGTCCT
TTGTCTGGATGAGGGATAGGTGACCTCCTTCATGGCATGATGATCTCAAA
GCATCATGATTTGGACAGGTGAAGAAGGATAAGGGTTCACACCTAATGGA
TTGGACAAATATTCTGCCATCATTTAGCTCACTGCCCAATCAGCAGTTAA
CAATCGCATATACAGAGACACACCTTAACTCAATGTGAATGGACTTCCTC
N

CCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGTAAGCAGCCAGGTGTGAGAGATTCGT
CATGAGGACTCAAAGGAAGTCAGATGTATGAAATGGAGGAAAGGTAACCA
GCCACGTGGCACTGTATAAAAGAGTAAATAGTTAACTGAGTTATGAGCTG
GCCAGAGAACAAGCCTAGTTTGAGGCAGAGGCATTTATTAATAAATAGCA
AGCCTCCAAGTTGTCATTCAGAAACTGGGGCACAGGTGGAAAAGCCCACA
GGCTGCATTGAGTGGAATTTATGATGGCTGTTAGTGCAGGTGATGTCACC
AGACAACTGTCAGTGTATTCCTCAGGGTGGACATTGTGATGCTTCATGGC
CACTGATTTGGAAGGCAGACGGCTTCTGCTAGGCACAAAATCAGGTTCTT
GCTTAATAGTATTCATGTTATGAACTGTGAAGAGGTCCCTTTGTCATGGC
TAATATTAATTGGCTTTTTCTACCTGCTTATGATCATTTAGTTCCCTTTT
AACCGACAGAGAACTCTTTTCACAACCCTCCACTACATATTTTATTTACT
TCTTCTTTGTTTTGTCTGCTTTTGTGCTCCGCCTTCCCTTTCTGTCTTTT
TTCTTTTCTTTTCCCTCTTTTTTCTTCTTCTTTCCTTATTTTTTTCTCTT
TCTTTTCCCTTTTTATCTCCTTTCCCCTTCCTCTTCCTCTTTATTTTTTC
CTCCTTTCTCTTCTCCCCCTTTCTTTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_c11.b1 MSMg01no361_c11.b1 CHROMAT_FILE:
MSMg01no361_c11.b1 PHD_FILE: MSMg01no361_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:06 2005
         (628 letters)



>mm_chr11_61288793_61289820
          Length = 1028

 Score = 1176 bits (608), Expect = 0.0
 Identities = 620/624 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaataaatgctgttactttttcctgacaccagctgtctgggctggatttatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gaattcatgaataaatgctgttactttttcctgacaccagctgtctgggctggatttatt 769

                                                                       
Query: 65  atgataggaagtcaaatgttatttaaatatggattatattaaaattgttctctactgtta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atgataggaagtcaaatgttatttaaatatggattatattaaaattgttctctactgtta 709

                                                                       
Query: 125 tactgctgttttatactattgtatgaccatggtgaccctacagccaataataagacacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tactgctgttttatactattgtatgaccatggtgaccctacagccaataataagacacca 649

                                                                       
Query: 185 agatcttttagtattttaaatcataggccttagctaggcagaccctaaagtaactcatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agatcttttagtattttaaatcataggccttagctaggcagaccctaaagtaactcatct 589

                                                                       
Query: 245 aagttaacctggccatctaaacccaacccaccgcatggctaactataccttccaggcctg 304
           |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 588 aagtcaacctggccatctaaacccaacccaccgcatggctaactataccttctaggcctg 529

                                                                       
Query: 305 tactcatgtctgtctcctcttgtgtctcctggcaaaataagcctttctctttcttcttcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tactcatgtctgtctcctcttgtgtctcctggcaaaataagcctttctctttcttcttcc 469

                                                                       
Query: 365 cagagacactgtctccctacctggaagcgcttctttcttctacatcttgcccagccttta 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cagagtcactgtctccctacctggaagcgcttctttcttctacatcttgcccagccttta 409

                                                                       
Query: 425 gtctacaaaaaaatccacattccagtctgaaccaatcagcagcaggacaatgcctgatcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtctacaaaaaaatccacattccagtctgaaccaatcagcagcaggacaatgcctgatcc 349

                                                                       
Query: 485 acccttttggggttgtcctttgtctggatgagggataggtgacctccttcatggcatgat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acccttttggggttgtcctttgtctggatgagggataggtgacctccttcatggcatgat 289

                                                                       
Query: 545 gatctcaaagcatcatgatttggacaggtgaagaaggataagggttcacacctaatggat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 288 gatctcaaagcatcatgatttggacaggtgaagaaggataagggttcacacctaatgaat 229

                                   
Query: 605 tggacaaatattctgccatcattt 628
           ||||||||||||||||||||||||
Sbjct: 228 tggacaaatattctgccatcattt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_c11.g1 MSMg01no361_c11.g1 CHROMAT_FILE:
MSMg01no361_c11.g1 PHD_FILE: MSMg01no361_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:06 2005
         (305 letters)



>mm_chr11_61111322_61112026
          Length = 705

 Score =  545 bits (282), Expect = e-159
 Identities = 297/302 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtaagcagccaggtgtgagagattcgtcatgaggactcaaaggaagtcagatgtatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtaagcagccaggtgtgagagattcgtcatgaggactcaaaggaagtcagatgtatga 260

                                                                       
Query: 61  aatggaggaaaggtaaccagccacgtggcactgtataaaagagtaaatagttaactgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggaggaaaggtaaccagccacgtggcactgtataaaagagtaaatagttaactgagt 320

                                                                       
Query: 121 tatgagctggccagagaacaagcctagtttgaggcagaggcatttattaataaatagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgagctggccagagaacaagcctagtttgaggcagaggcatttattaataaatagcaa 380

                                                                       
Query: 181 gcctccaagttgtcattcagaaactggggcacaggtggaaaagcccacaggctgcattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gcctccaagttgtcattcagaaactggggcacaggtggaaaagcccataggctgcattga 440

                                                                       
Query: 241 gtggaatttatgatggctgttagtgcaggtgatgtcaccagacaactgtcagtgtattcc 300
           ||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 gtggaagccatgatggctgttagtgcaggtgatgtcaccagacaactgtcagtgtagtcc 500

             
Query: 301 tc 302
           ||
Sbjct: 501 tc 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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