BAC Information

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BAC

Clone NameMSMg01-361D03
Chromosome11 (Build37)
Map Location 110,338,892 - 110,523,330
singlet/doubletdoublet
Overlap geneMap2k6
Upstream geneArsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5
Downstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361D03.T7 (MSMg01no361_d03.b1)MSMg01-361D03.TJ (MSMg01no361_d03.g1)
ACCAG470188AG470189
length750765
length of high quality
(start - end)		659 (50 - 708)540 (80 - 619)
definitionCHROMAT_FILE: MSMg01no361_d03.b1 PHD_FILE: MSMg01no361_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:09 2005CHROMAT_FILE: MSMg01no361_d03.g1 PHD_FILE: MSMg01no361_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,338,892 - 110,339,546)(110,522,791 - 110,523,330)
sequence
NCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAAGGTTGAATCTGCTAGCACCTGGAGCTCTCCCTGTAGA
GGGGACCATGTAGGGACAGGCGAGCTGCTAAGAGATTCATTCTGCCTTCT
TAATTAACATGATTCTAAGTTTTCAAACGAGCTTTCCAGTTTTTCTTCTC
TAAACTTTGTGTAATCTCCCACCCACCTGATATTTTGCCCTCCGTGCCGA
GACTTAGTGATGTGCAACAGCATGTGGTTTGTGGAGTTGTGTTGGTTGGG
GCTCCTTGTCCTCTTCCTAGTGGCTTGTGTAAAGGCAGCTTTACCTCTGC
ACCCCCTGCCTCCTCTGGGCTCCGTTAGCCGATTTGCATATGATCCTTGT
AGTTTAATGGCACCTAATGACACTTTTCTGTGAGCTTTGTTGCCAGATAC
ACTTGGAACAGGAGGCCAGATGCAAGTTGTTGGGAGAGGGCAGCCAAGGG
CTCCAGGTCCCCAGGAACTTGGCTAGAAGTCCCATTCACACCAGGAAACA
CGATAGAAAAAGTAAACTTGGCACCGGTGACCTGCAGTTCTTCCTCTTGG
GAAGCCATGACAGTAGTCGCAGACCCCCAGAGTCATGCTTGCCAGCCTTC
AGTGGCACTGACAAATTCTGAGACACCCGATTATCTCTTGGTGGCACCTT
CTGCCAGCCGCGTGGNGCTGCATGCTGTTTGGGTTGGCACAAAGCATAGC


NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGCCAAGGGTCCTGGCAG
AGTTTCTGAAACAAGCAAAATGGAAAAAACTACCCAGGATAAAAGTCACT
CTAAAAACAGCCCAGTTGTCACCAAATGCTGTGTGGTAGTCAGATAACCA
CTGGTTAGCAAGGGAGTGTTTACTGCGGGATATAGACAGTTGGTTTATAA
GGGGAAATTGAACTCAGAGCATCCTGGTAGACTTGTCAGCTGCAGTCAAT
AGGATGGAAGAGAAGAGAGAGAGAGAGGGAAAGAGTGTTTTCAAAATAGA
TTACCATGTGCATTTAGAAGTATATAAAAAATCTACATTTAAAGGTAGGT
ATTTAATACCTTTTTCCCCAAGTTTCTATTTCAGACTCAGTATTAAACTA
TCTTAAGTGCAAGATGGAGAGGTGGCTCACTCAGTAGTGAAGAGTGTTTG
CTGTTTTTCCAGAGGACCCAAGTTCAATTCCCAGTACACTTGTTGGCTGA
CTCACAAGCAGACGTAACTCCAATTCCAGGAGATCTGCCATTTACAGGCA
CAAGCACACCACAGACATGGGGGAAAACATGTATGTGTGTATGCACACAC
ACATACAGAGAGGGAGAATTCACTCTCACAGACACCCGCCTACCAAGAAA
CATAAAAATTATCTTATGACCATGGGAATTACAAAGTACCTTGATTTTTA
AATAACCCCTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_d03.b1 MSMg01no361_d03.b1 CHROMAT_FILE:
MSMg01no361_d03.b1 PHD_FILE: MSMg01no361_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:09 2005
         (659 letters)



>mm_chr11_110338688_110339746
          Length = 1059

 Score = 1243 bits (643), Expect = 0.0
 Identities = 652/655 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaggttgaatctgctagcacctggagctctccctgtagaggggaccatgtag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaggttgaatctgctagcacctggagctctccctgtagaggggaccatgtag 264

                                                                       
Query: 65  ggacaggcgagctgctaagagattcattctgccttcttaattaacatgattctaagtttt 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggacaggtgagctgctaagagattcattctgccttcttaattaacatgattctaagtttt 324

                                                                       
Query: 125 caaacgagctttccagtttttcttctctaaactttgtgtaatctcccacccacctgatat 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 caaacgagctttccaatttttcttctctaaactttgtgtaatctcccacccacctgagat 384

                                                                       
Query: 185 tttgccctccgtgccgagacttagtgatgtgcaacagcatgtggtttgtggagttgtgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgccctccgtgccgagacttagtgatgtgcaacagcatgtggtttgtggagttgtgtt 444

                                                                       
Query: 245 ggttggggctccttgtcctcttcctagtggcttgtgtaaaggcagctttacctctgcacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggttggggctccttgtcctcttcctagtggcttgtgtaaaggcagctttacctctgcacc 504

                                                                       
Query: 305 ccctgcctcctctgggctccgttagccgatttgcatatgatccttgtagtttaatggcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccctgcctcctctgggctccgttagccgatttgcatatgatccttgtagtttaatggcac 564

                                                                       
Query: 365 ctaatgacacttttctgtgagctttgttgccagatacacttggaacaggaggccagatgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaatgacacttttctgtgagctttgttgccagatacacttggaacaggaggccagatgc 624

                                                                       
Query: 425 aagttgttgggagagggcagccaagggctccaggtccccaggaacttggctagaagtccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagttgttgggagagggcagccaagggctccaggtccccaggaacttggctagaagtccc 684

                                                                       
Query: 485 attcacaccaggaaacacgatagaaaaagtaaacttggcaccggtgacctgcagttcttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attcacaccaggaaacacgatagaaaaagtaaacttggcaccggtgacctgcagttcttc 744

                                                                       
Query: 545 ctcttgggaagccatgacagtagtcgcagacccccagagtcatgcttgccagccttcagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcttgggaagccatgacagtagtcgcagacccccagagtcatgcttgccagccttcagt 804

                                                                  
Query: 605 ggcactgacaaattctgagacacccgattatctcttggtggcaccttctgccagc 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggcactgacaaattctgagacacccgattatctcttggtggcaccttctgccagc 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_d03.g1 MSMg01no361_d03.g1 CHROMAT_FILE:
MSMg01no361_d03.g1 PHD_FILE: MSMg01no361_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:09 2005
         (540 letters)



>mm_chr11_110522746_110523685
          Length = 940

 Score =  998 bits (516), Expect = 0.0
 Identities = 534/540 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgccaagggtcctggcagagtttctgaaacaagcaaaatggaaaaaactacccagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tactgccaagggtcctggcagagtttctgaaacaagcaaaatggaaaaaactacccagga 526

                                                                       
Query: 61  taaaagtcactctaaaaacagcccagttgtcaccaaatgctgtgtggtagtcagataacc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 525 taaaagtcactctaaaaacagcccagttgtcaccaaatgctatgtggtagtcagataacc 466

                                                                       
Query: 121 actggttagcaagggagtgtttactgcgggatatagacagttggtttataaggggaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 465 actggttagcaagggagtgtttactgcgggatatagacagttggtttataaggggaagtt 406

                                                                       
Query: 181 gaactcagagcatcctggtagacttgtcagctgcagtcaataggatggaagagaagagag 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaactcagatcatcctggtagacttgtcagctgcagtcaataggatggaagagaagagag 346

                                                                       
Query: 241 agagagagggaaagagtgttttcaaaatagattaccatgtgcatttagaagtatataaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 345 agagagagggaaagagtgttttcaaaatagattaccatgtgcatttagaagtatatcaaa 286

                                                                       
Query: 301 aatctacatttaaaggtaggtatttaatacctttttccccaagtttctatttcagactca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aatctacatttaaaggtaggtatttaatacctttttccccaagtttctatttcagactca 226

                                                                       
Query: 361 gtattaaactatcttaagtgcaagatggagaggtggctcactcagtagtgaagagtgttt 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gtattaagctatcttaagtgcaagatggagaggtggctcactcagtagtgaagagtgttt 166

                                                                       
Query: 421 gctgtttttccagaggacccaagttcaattcccagtacacttgttggctgactcacaagc 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 165 gctgtttttccagaggacccaagttcaattcccagtacacttgctggctgactcacaagc 106

                                                                       
Query: 481 agacgtaactccaattccaggagatctgccatttacaggcacaagcacaccacagacatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 agacgtaactccaattccaggagatctgccatttacaggcacaagcacaccacagacatg 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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