BAC Information

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BAC

Clone NameMSMg01-361F22
Chromosome11 (Build37)
Map Location 18,723,773 - 18,952,316
singlet/doubletdoublet
Overlap geneMeis1
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361F22.T7 (MSMg01no361_f22.b1)MSMg01-361F22.TJ (MSMg01no361_f22.g1)
ACCAG470318AG470319
length780787
length of high quality
(start - end)		548 (48 - 595)476 (78 - 553)
definitionCHROMAT_FILE: MSMg01no361_f22.b1 PHD_FILE: MSMg01no361_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:24 2005CHROMAT_FILE: MSMg01no361_f22.g1 PHD_FILE: MSMg01no361_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,951,773 - 18,952,316)(18,723,773 - 18,724,248)
sequence
TCTTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAAAGCTGTTGTCAGGAAAGAGTTTCCTTGCTTCCTTGTCATC
AATACATTTTATAAAAAACAAAAGAAGAAAACATAAAATTTAGAGTAAAT
TACTATACTTTTCTTGGTCTCTTCCTGGATGTATCAAAATAGGTAACATG
TGTTACTAGTGTCCTATACATGGAAACGCTGAGCACCAGAAAGCTCAAAC
ATTTCATTAAAAGCCCCACAAAGGCCAGTGATGAAAGAGAGATGTGAAGC
TTCAAACGGTAGCTTTCTGTTTCCAGGTTAGCAGACTAACTGTTCAATGG
AAGGGGTCACATGGGAATTGAACATCAAATTTGTGTATCAATTTTCAATG
TGGCACATTAGTATATTTTCCAACTTTACAACTGTCATAGTAGAAAAATC
CCTTCTGAGTGACATGGCCATGAACGCAGCTGAACCAATTAGGTCGGGAT
GGCACCAGAAGGTTAGCTATCTAACGGTGATGAGACATTTTATTGATGAA
AAGTGCCATATTAATTACCAAAAATTACCATTATTGTATCCCTGTTCAGT
ATTTATATCCAGTGAAATTATAGGTTAAAACTATGAGTGCTGCGCTGCCC
CTGGTCCTCTGAAAAACACTGGGACCTGCAGATTTGTCGCCTACTCCGTT
TGGCATGTTTGAGGCAAACCCACTTTTCTTCGGTGACTTCCCAGTAGGCT
TCCCAAATTATTCAAGACATTTTCCTATCT

NCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGCCTCACAGAATACTCTAGA
TCATTTTGACCGTTTTCTATTTGACTGCTATTGGTGCTGTTTCGTGGGCA
TCTGTGAGTTGAAGGTATTTCTATGTTTTGTGGGGTTTGCTGCTGTTCTT
CCAGGAGCTTGGTTTCTACTCTCTGAACAGTACTTGAGGGGAGTGAGCCC
TCAAGAGTAGTCTCCTCATAAGAAGATCCCCAAATAAAACCACAAGAGAT
AGCCAAGCCTCCACAGGCACAAATCACAATACAGAAACTTAAGAAGCATG
AAAAGTCAGGGTATTGCTGCTTCAAAAGACCATAATTCAACTCTTAATCA
GTAGATACCTAGCTGCATTAAATACCAGATTAAGATTTCACAAGTTTGTG
GGTAAATATCACTGACCTCAGAAAGGATACAAAATAATATATGAATACAG
TCTTCTAATTAATACAGGACTTACAAGATAAAGCCAGTAGCAAACAAGAA
AAAGAAAGCAAAGAACTTAACATTTTTAACAATATAGAGACGTTGATATT
TGAAAAGTCAAAGGATCTTGAAAATAAAACCCACAGTGGAAATAAGGTGT
TACCCCTATACTCCTTCCAGCAGAAGAAAAAACATTTTTTTTTATTTATG
GCAAAACTCCTTCTTTTTCTTAAAACACCAACCTTGGTATAAAGGGGGGG
GGGGCAAAAAAAAACCCTCCCTGCGTTTTTATTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_f22.b1 MSMg01no361_f22.b1 CHROMAT_FILE:
MSMg01no361_f22.b1 PHD_FILE: MSMg01no361_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:24 2005
         (548 letters)



>mm_chr11_18951569_18952516
          Length = 948

 Score = 1036 bits (536), Expect = 0.0
 Identities = 542/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaagctgttgtcaggaaagagtttccttgcttccttgtcatcaatacatttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaattctaaagctgttgtcaggaaagagtttccttgcttccttgtcatcaatacatttta 689

                                                                       
Query: 65  taaaaaacaaaagaagaaaacataaaatttagagtaaattactatacttttcttggtctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 taaaaaacaaaagaagaaaacataaaatttagagtaaattactatacttttcttggtctc 629

                                                                       
Query: 125 ttcctggatgtatcaaaataggtaacatgtgttactagtgtcctatacatggaaacgctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttcctggatgtatcaaaataggtaacatgtgttactagtgtcctatacatggaaacgctg 569

                                                                       
Query: 185 agcaccagaaagctcaaacatttcattaaaagccccacaaaggccagtgatgaaagagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agcaccagaaagctcaaacatttcattaaaagccccacaaaggccagtgatgaaagagag 509

                                                                       
Query: 245 atgtgaagcttcaaacggtagctttctgtttccaggttagcagactaactgttcaatgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atgtgaagcttcaaacggtagctttctgtttccaggttagcagactaactgttcaatgga 449

                                                                       
Query: 305 aggggtcacatgggaattgaacatcaaatttgtgtatcaattttcaatgtggcacattag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aggggtcacatgggaattgaacatcaaatttgtgtatcaattttcaatgtggcacattag 389

                                                                       
Query: 365 tatattttccaactttacaactgtcatagtagaaaaatcccttctgagtgacatggccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tatattttccaactttacaactgtcatagtagaaaaatcccttctgagtgacatggccat 329

                                                                       
Query: 425 gaacgcagctgaaccaattaggtcgggatggcaccagaaggttagctatctaacggtgat 484
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 328 gaacgcagctgaaccaattaggtcgggatggcaccaggaggttagctatctaacagtgat 269

                                                                       
Query: 485 gagacattttattgatgaaaagtgccatattaattaccaaaaattaccattattgtatcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gagacattttattgatgaaaagtgccatattaattaccaaaaattaccattattgtatcc 209

               
Query: 545 ctgt 548
           ||||
Sbjct: 208 ctgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_f22.g1 MSMg01no361_f22.g1 CHROMAT_FILE:
MSMg01no361_f22.g1 PHD_FILE: MSMg01no361_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:24 2005
         (476 letters)



>mm_chr11_18723573_18724448
          Length = 876

 Score =  920 bits (476), Expect = 0.0
 Identities = 476/476 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagcctcacagaatactctagatcattttgaccgttttctatttgactgctattggtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagcctcacagaatactctagatcattttgaccgttttctatttgactgctattggtgc 260

                                                                       
Query: 61  tgtttcgtgggcatctgtgagttgaaggtatttctatgttttgtggggtttgctgctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttcgtgggcatctgtgagttgaaggtatttctatgttttgtggggtttgctgctgtt 320

                                                                       
Query: 121 cttccaggagcttggtttctactctctgaacagtacttgaggggagtgagccctcaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccaggagcttggtttctactctctgaacagtacttgaggggagtgagccctcaagag 380

                                                                       
Query: 181 tagtctcctcataagaagatccccaaataaaaccacaagagatagccaagcctccacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtctcctcataagaagatccccaaataaaaccacaagagatagccaagcctccacagg 440

                                                                       
Query: 241 cacaaatcacaatacagaaacttaagaagcatgaaaagtcagggtattgctgcttcaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaaatcacaatacagaaacttaagaagcatgaaaagtcagggtattgctgcttcaaaa 500

                                                                       
Query: 301 gaccataattcaactcttaatcagtagatacctagctgcattaaataccagattaagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccataattcaactcttaatcagtagatacctagctgcattaaataccagattaagatt 560

                                                                       
Query: 361 tcacaagtttgtgggtaaatatcactgacctcagaaaggatacaaaataatatatgaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacaagtttgtgggtaaatatcactgacctcagaaaggatacaaaataatatatgaata 620

                                                                   
Query: 421 cagtcttctaattaatacaggacttacaagataaagccagtagcaaacaagaaaaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtcttctaattaatacaggacttacaagataaagccagtagcaaacaagaaaaa 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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