Query= MSMg01no361_j16.b1 MSMg01no361_j16.b1 CHROMAT_FILE:
MSMg01no361_j16.b1 PHD_FILE: MSMg01no361_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:42 2005
(454 letters)
>mm_chr11_39667685_39668540
Length = 856
Score = 455 bits (235), Expect = e-132
Identities = 245/249 (98%), Gaps = 2/249 (0%)
Strand = Plus / Minus
Query: 5 gaattctttcactattttatctaaagatgcttgtttctcatgcttatagaagacattata 64
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 446 gaattctttcactattttatctaaagatgcttgtttctcatgcttctagaagacattata 387
Query: 65 attatgtctgcctctctacagttatcactattttgttgtttacttatttgcattattgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attatgtctgcctctctacagttatcactattttgttgtttacttatttgcattattgat 327
Query: 125 cactag--tttttttttaaataaaatgggtacattattaaccttcatagtctttaccatt 182
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cactaggtttttttttttaataaaatgggtacattattaaccttcatagtctttaccatt 267
Query: 183 ttgtgcattttatggcaaggatataacattctaaattctgaacagttaagagcactgact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttgtgcattttatggcaaggatataacattctaaattctgaacagttaagagcactgact 207
Query: 243 gctcttgta 251
|||||||||
Sbjct: 206 gctcttgta 198
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 856
Length adjustment: 10
Effective length of query: 444
Effective length of database: 846
Effective search space: 375624
Effective search space used: 375624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_j16.g1 MSMg01no361_j16.g1 CHROMAT_FILE:
MSMg01no361_j16.g1 PHD_FILE: MSMg01no361_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:42 2005
(518 letters)
>mm_chr11_39490609_39491526
Length = 918
Score = 988 bits (511), Expect = 0.0
Identities = 514/515 (99%)
Strand = Plus / Plus
Query: 1 aagttgctgaaatagtagtcaccatatgcaaatcccacttgaaccaaaacagggtcaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagttgctgaaatagtagtcaccatatgcaaatcccacttgaaccaaaacagggtcaagg 260
Query: 61 atcctcagcttttagatgctcattccaaagaggaaatgtttggctgagcatttgtcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctcagcttttagatgctcattccaaagaggaaatgtttggctgagcatttgtcttct 320
Query: 121 gtaaagaactatataaatattttggttccttgctgcaggaccaaaggtcatggattcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaagaactatataaatattttggttccttgctgcaggaccaaaggtcatggattcacc 380
Query: 181 acacacttggaaataaactgattaaaaagataaaatttaatgaatatttaattgctaata 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 acacacttggaaataaactgattaaaaagataaaatttaatgagtatttaattgctaata 440
Query: 241 gaaattatgctatcctctcttcttgtggataatttttatcaaagtctgtataaaatagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaattatgctatcctctcttcttgtggataatttttatcaaagtctgtataaaatagtc 500
Query: 301 attattcttgtagtcatttaatcgcagggaaacgaagacttaagtaaatagcctttcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attattcttgtagtcatttaatcgcagggaaacgaagacttaagtaaatagcctttcaat 560
Query: 361 ggatagcaagtagtggagaggtggagtcagtgttttgttaatggtgaaacctgagtcccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggatagcaagtagtggagaggtggagtcagtgttttgttaatggtgaaacctgagtcccc 620
Query: 421 tttgataaatggattcaagaagagactcaaataagcattcaaggactgtgtgtgtgtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgataaatggattcaagaagagactcaaataagcattcaaggactgtgtgtgtgtgtg 680
Query: 481 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 515
|||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
