BAC Information

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BAC

Clone NameMSMg01-361L21
Chromosome11 (Build37)
Map Location 71,073,696 - 71,074,166
singlet/doubletsinglet
Overlap geneNlrp1c
Upstream geneAlox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b
Downstream geneLOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361L21.T7 (MSMg01no361_l21.b1)MSMg01-361L21.TJ (MSMg01no361_l21.g1)
ACCAG470595AG470596
length777785
length of high quality
(start - end)		512 (47 - 558)471 (78 - 548)
definitionCHROMAT_FILE: MSMg01no361_l21.b1 PHD_FILE: MSMg01no361_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:52 2005CHROMAT_FILE: MSMg01no361_l21.g1 PHD_FILE: MSMg01no361_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCCACATCTCCAGAAACACGTCTAGATAGAAAATTAAGTAAAG
CAGAACAGATCAAGAAAAATAAAACAAAAGAAGAAAATCAAAAAGGCAAA
AAGCAAAGCAAAACAAAACAAAAACAAAACACTCCAAACCCCTAACATAT
CAAACAGCAACAACAACAACAACAACAACAACAACAACAACAAAAACCCA
AACAAAAATATAACAAACCAAAAATTACCTGTAACTCTCATATAAAACAA
ACAAACAAACAAACAAACAAACAAACAAAAAAACCCAAACAACCAATGGC
CTAAGAAAGAAATTAGGGAACAATTTCCAACTTGCTACACTATAGCCATA
AATACTTGGAGTAAGTCTAACCAAGCAAATGAAAGACCTAAATGACAAGA
ACTTTACATTTTTGAAGAATGAAATTGAAGAAGATATCAGAAGATGCAAA
GATTCCCCTACTTATGGATCAGTAGGATTAACACATAAAAATTGCTATCC
TACCAAAAGTAATCTGCAGATTCAATGCAATTCCCATTAAAATACTAACA
CAATTCTTTACAGACCCTGAAAGATCAATACCCAACTTCATATTATAAAA
CAAAAACCCAGGAGAGCCTAAAACCCCGAATAATAAAAGAACTTCTGGTG
AGAACACCATCTCTGAATTTCAGCGGGACTAGAGAGGGAAAGTAATAAAA
ACCCCTTGGTACTGGGAGGAAAAAAAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACCTAGACCAGAAAAGGCAC
AACAGAGAGCTAACCACTGGCAGCTCAGCATGCTAAGGCTCACAAAGGGA
GACCTGAGATAAGTTTTCAAAAGCAATGAGCCCTGGAGAAGCTGACAGTG
AGCATCTCCCATGCAGGCTTGTTGAATGCGGCCTCACATCCACATACTGC
TCACTCCTGGCCTCAGTACTCAGTGCCTGCTCCAGCCTGACTGAGCTAAA
CCTGCGGCTGAACTACCTGGGTAACCGTGGTGTGAAGCTGCTGTGTGAGG
GGCTCAGGAATCCTGCCTGTAACCTCAGCACCCTGTGGTAAGCAAGCACT
GCATTTCCTTTTTGGACATAAGGAGAGGAAGGGACATAGGTGAGTTCCCA
GATGACAAAACATAAAAAAGAAAAGGTATAGATGATTCATAGTTAACTTG
GCTCCTGACCAGCTATACCACTAACACCCTGTTATTAGGCAAGTCACTGT
CTTCTGGTAAACTCAGTGTCCTCATGGATTAAATGGGATGTGATAGCCAC
CACATAAACATGTGATGTATATTACACTACATGTGAGAAAGCCTACCGTA
TAATTATGGATGAAAAAAGAAAATATTACGGAAAGACCTGGGATTGGGGG
AACCAATGCCTTGACTTGACATAAATAGNAAGGGATTCCCCAGCTTGCCT
TTTTCCAAGAAGGCCCCATCCCTTTTTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_l21.g1 MSMg01no361_l21.g1 CHROMAT_FILE:
MSMg01no361_l21.g1 PHD_FILE: MSMg01no361_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:52 2005
         (471 letters)



>mm_chr11_71073496_71074366
          Length = 871

 Score =  880 bits (455), Expect = 0.0
 Identities = 467/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacctagaccagaaaaggcacaacagagagctaaccactggcagctcagcatgctaag 60
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 671 tctacctagaccagaaaaggcacaacaaagacctaaccactggcagctcagcatgctaag 612

                                                                       
Query: 61  gctcacaaagggagacctgagataagttttcaaaagcaatgagccctggagaagctgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gctcacaaagggagacctgagataagttttcaaaagcaatgagccctggagaagctgaca 552

                                                                       
Query: 121 gtgagcatctcccatgcaggcttgttgaatgcggcctcacatccacatactgctcactcc 180
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtgaccatttcccatgcaggcttgttgaatgcggcctcacatccacatactgctcactcc 492

                                                                       
Query: 181 tggcctcagtactcagtgcctgctccagcctgactgagctaaacctgcggctgaactacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tggcctcagtactcagtgcctgctccagcctgactgagctaaacctgcggctgaactacc 432

                                                                       
Query: 241 tgggtaaccgtggtgtgaagctgctgtgtgaggggctcaggaatcctgcctgtaacctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgggtaaccgtggtgtgaagctgctgtgtgaggggctcaggaatcctgcctgtaacctca 372

                                                                       
Query: 301 gcaccctgtggtaagcaagcactgcatttcctttttggacataaggagaggaagggacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gcaccctgtggtaagcaagcactgcatttcctttttggacataaggagaggaagggacat 312

                                                                       
Query: 361 aggtgagttcccagatgacaaaacataaaaaagaaaaggtatagatgattcatagttaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aggtgagttcccagatgacaaaacataaaaaagaaaaggtatagatgattcatagttaac 252

                                                              
Query: 421 ttggctcctgaccagctataccactaacaccctgttattaggcaagtcact 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttggctcctgaccagctataccactaacaccctgttattaggcaagtcact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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