BAC Information

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BAC

Clone NameMSMg01-362B10
Chromosome11 (Build37)
Map Location 50,492,197 - 50,492,476
singlet/doubletsinglet
Overlap geneAdamts2
Upstream geneCnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneZfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362B10.T7 (MSMg01no362_b10.b1)MSMg01-362B10.TJ (MSMg01no362_b10.g1)
ACCAG470858AG470859
length850786
length of high quality
(start - end)
181 (42 - 222)280 (74 - 353)
definitionCHROMAT_FILE: MSMg01no362_b10.b1 PHD_FILE: MSMg01no362_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:19 2005CHROMAT_FILE: MSMg01no362_b10.g1 PHD_FILE: MSMg01no362_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGTTGTTTTTTTACG
TCCCATTTGTCCCTTCTCGATCTTACTTCTCCAGCCATTGTTGTTTTGTT
TCTGAATTTTTCCCCTGTGTCCATATCTTTCAGTTTTTTTCCCATTTTTT
TTTCTATTAGTTTTTTTTGCCTCTGCTTCCCTGTTTTCCTTCTCTTTTTC
CTTTTTTTTTTACCTTATTTTTTTTTTATTTCTCTTCCCTTTTTTCTCTT
TTTTCTTCTTTTTTGCTATTTCTCCTTTTTTTCTTACATTTTTTTTTTTT
TTATTCTCCTCCTCTTTCCCCTCTTTTCTCTCCCCTCCTCTTCTTCCTTT
TTTTCACCCCCCCTCTCTTTTTTTTCTTTTCTTTTTTTTTCTCTTTTTCG
TTTCTTCTTTTCACTCCCCTCTTCTCTTTCTTTTTTTTCCCGTCCCGTCC
TGCCCCTTTTCTCCTCTCCTCTTTTTCCTTTTCCTCTTTTCCCTCTTCTT
TTTTCCCTCTTCTTTTTTCCCCTCTTCTCTTCCCCTTCTCTTCTTTTCAT
TCTTTCCTTCTCTCTATCTTTTTTTCTCTTCTCTCTCTCTCCCCCTCTCT
CCCTCTCCCTTTCTCTTTTCTACCCTCTTTCTTTTTCTCCCTCCACCCCG

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTACAAGCAAGAGAGTCTCTCCACAG
CTAATGTGCTCCGTGACCGAGAGACATGTCCTCACTCAGCCTCGCTGGGC
TTCTGTCTCTGCAGCTCTGAAGCGGAGAAGCAGGCCTGGTGCTGAGAAGC
ACTTCAGGCATGGCCGGCCTTCAGCTGGGTCTGAGCCGGCTGAGTTCTCA
GCTGCCCAGGCTCAGAGCTGGCCAAGAGGGCTCTGCACAAGGCTTCAGCA
TCCATGAAGTTACATCTAGGCCCCAATCCTCCATGCTCCATACAGCAGTT
GGATGTCTTGGCTCTACAGTCTATGTTGTGACTCTACAACCTATGACCTG
GACAACTGTCAGAGCCTCAGTTCCCTATCTGTATAGTATACAGATCTGTA
TCACCTACCAATCCCAGAGGCTCATTACAAGAATCCTGAGGTGTGTGTAC
TCCTTGTGGACACGTTTATCACATGTTGAACGCTCACGTTTAACTCTCCC
TACCCCCACCATAGCTTGGATATTCCTCCCCATCCTTTCCGTTTTTACCC
CTTTCATCTCCCTTCTTCCCCTCCCATCTTTATTCTTGGCCCTCTAGCCC
TAACTCCCCTTCCTTCTCCTCGCTCTCTTCCCTCTCCCCTCTTACTCTTT
CTCCATCCCTTCTCTCATAAGTTTTTCCCCCCCGCTGCTACCCCCCTCTT
CTTATTTTTCCCTCCCTCTTTCCCCCCCTCTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_b10.g1 MSMg01no362_b10.g1 CHROMAT_FILE:
MSMg01no362_b10.g1 PHD_FILE: MSMg01no362_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:19 2005
         (280 letters)



>mm_chr11_50491997_50492676
          Length = 680

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctacaagcaagagagtctctccacagctaatgtgctccgtgaccgagagacatgtcctc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 480 cctacaagcaagagagtctctccgcagctaatgtgctccgtgaccgagagacatgtcctc 421

                                                                       
Query: 61  actcagcctcgctgggcttctgtctctgcagctctgaagcggagaagcaggcctggtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 actcagcctcgctgggcttctgtctctgcagctctgaagcggagaagcaggcctggtgct 361

                                                                       
Query: 121 gagaagcacttcaggcatggccggccttcagctgggtctgagccggctgagttctcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gagaagcacttcaggcatggccggccttcagctgggtctgagccggctgagttctcagct 301

                                                                       
Query: 181 gcccaggctcagagctggccaagagggctctgcacaaggcttcagcatccatgaagttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 300 gcccaggctcagagctggccaagagggctctgcacaaggcttcagcagccatgaagttac 241

                                                   
Query: 241 atctaggccccaatcctccatgctccatacagcagttgga 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atctaggccccaatcctccatgctccatacagcagttgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)