Query= MSMg01no362_e13.b1 MSMg01no362_e13.b1 CHROMAT_FILE:
MSMg01no362_e13.b1 PHD_FILE: MSMg01no362_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:35 2005
(404 letters)
>mm_chr11_115730546_115731349
Length = 804
Score = 754 bits (390), Expect = 0.0
Identities = 400/404 (99%), Gaps = 2/404 (0%)
Strand = Plus / Plus
Query: 1 agtgtgtacaggacctgagaaagtgtggctccttccttaccaggccacagaccacacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtgtacaggacctgagaaagtgtggctccttccttaccaggccacagaccacacctt 260
Query: 61 cctccagaagtgccactatcaccatggtgaccaccccagctacgccaagcctcagctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccagaagtgccactatcaccatggtgaccaccccagctacgccaagcctcagctgcc 320
Query: 121 cctgccaatcttcacggtgcggcactacgctgggactgtcacctaccaggtatctgccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgccaatcttcacggtgcggcactacgctgggactgtcacctaccaggtatctgccct 380
Query: 181 cagacaaagaatgcaggtgaatcatcaaggccgtgtcatcgtagtgtctgcccctcccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagacaaagaatgcaggtgaatcatcaaggccgtgtcatcgtagtgtctgcccctcccaa 440
Query: 241 gctgaatcacctaccagaagtggcaccgtatctccatgagagcctcaggccacacccact 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgagtcacctaccagaagtggcaccgtatctccatgagagcctcaggccacacccact 500
Query: 301 tctgagtgttattttttaatagctccttagctaaggatggggccttgagagcccctccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgagtgttattttttaatagctccttagctaaggatggggccttgagagcccctccca 560
Query: 361 tccatgctggatttttttttttttttacatttgttttcagttaa 404
|||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 561 tccatgctggattttttttttttt--acatttgtttttagttaa 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_e13.g1 MSMg01no362_e13.g1 CHROMAT_FILE:
MSMg01no362_e13.g1 PHD_FILE: MSMg01no362_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:36 2005
(480 letters)
>mm_chr11_115918879_115919758
Length = 880
Score = 893 bits (462), Expect = 0.0
Identities = 478/490 (97%), Gaps = 11/490 (2%)
Strand = Plus / Minus
Query: 1 ttatcatggcctcgggggcttaagactgggtgggagtgcatgtgtgaaggtatcctgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttatcatggcctcgggggcttaagactgggtgggagtgcatgtgtgaaggtatcctgttg 431
Query: 61 gagtatagcatccccgtgagaggtagggagagggtcctgactcacaggatcaggtaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gagtatagcatccccgtgagaggtagggagagggtcctgactcacaggatcaggtaggtc 371
Query: 121 aaaagctaccagccagcacctcctgtgaagggagggccagagcaggaggggccaggtaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaagctaccagccagcacctcctgtgaagggagggccagagcaggaggggccaggtaag 311
Query: 181 cctgggctatctcccttgttttacagacaggacaaaaaatgtactagtaagaccactaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cctgggctatctcccttgttttacagacaggacaaaaaatgtactagtaagaccactaac 251
Query: 241 acaacaggagagcctgggtgtctgactccagaagcctc-----------cttcccctcag 289
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 250 acaacaggagagcctgggtgtctgactccagaagcctccttcccctcagcttcccctcag 191
Query: 290 caggctgccatgctatccacagctctctggctgccagggcagcgctatcttcatgagcct 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 caggctgccatgctatccacagctctctggctgccagggcagcgctatcttcatgagcct 131
Query: 350 ccttatctcttgctggcttccttccacccaggctcgctgttctagtctcttctgctttgc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ccttatctcttgctggcttccttccacccaggctcgctgttctagtctcttctgctttgc 71
Query: 410 tcccttgcccactgactgacttttcagtatagtatcagcacattgggaaaaaagacgaca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tcccttgcccactgactgacttttcagtatagtatcagcacattgggaaaaaagacgaca 11
Query: 470 ctggactgtt 479
||| ||||||
Sbjct: 10 ctgaactgtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
