XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGAGCAGCATTATGTATAGTGAATCCTATGCAATGCCATTCTCAGTTTTA
TTTTCATAAACAGATTTCTGTATTGATATTTTTAAAGACTAATTTTTAAT
TTGTTATCCATACCTCTTTGCACATAATACACAGTAGCAATGTAGGTTTA
CCACCATGTTCCTAACTAGATGGATTATCATTTGGACTAGAGTTTTAACT
ATGTCATCTATTGACGATCAAGGTGACATGGCAGGGATACTTTCCCTGAG
TAGACATATACATATTTTTCGTTGTGTCATCTATAGGAAAATATATACTA
ATATCTTTGATTGGCTCATGTCCCTTTTCTTTTCATTCACATAGTTCATA
GTAGAAAATTATGTGTGTAGCTGCAGGTTGTATTTCACTACTCAGAACAT
GAATAAACATGATGACAGATAAAGCAATAAATATAATAATAAAACTCTCA
CACAGATTACATACAATGAACACACATATACACAGGCAGTTACAAGGACA
GTGAATGTTAAGATGCAAGAAGTGAGGTTGGTGAAAGGACAGCCTGCAGG
TGAAGCCTGGTGTTAAGTGGAGAAACTCATGTCTGTCCTTCTACTCTTCC
TTATGCACAATTGTCAATTTTCCACATCACAAATACCCTGTGGCTGATAG
GACAGACTGGTTTTTGTTTTGAAATACTTTTCTTTCAGAAT

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGCTGATACTCACGTCTTTGC
TTCCTGATTTCTTTCCTAGGGCTTCTATTTCCAGAGTTGTCTCCATTGGG
GTTTTCTTTATTGTTTCTACTTCCATTTTTAGATCTTGGATGGTTTTATT
CAATTCCATCCCCTGTTTGGTTGTGTTTTCCTGTAATTCTTAAGGGATTT
TTGTGTTTCTTCTTTAAGGACTTCTACCCGTTTAGCAGTGTTCTCCTGTA
ATTCCTTGAGGGATTTTTGTGGTTCCTCTTTAAGGGCTTCTACCTGTTTA
GCAGTGTTCTCCCTGTATTTGTTTAAGGGTATTATTTATGCCCGTCTTAA
AATCTTCTACCATCATCATGAGACATGATTTTCAATCCGTGTCTAGCTTT
TTGGGTGTGTTGGGGTATCCAAGACTCTCTGTGGTGGGCGTACTGGATTT
TGATGATGCACAGTGGTCTTTGTTTCTGTTACTAAAATTCTTATGCTCGT
CTTGTGCTATCTGTTCAACCCTGGTGTTAAAGCTTAAACTTGCCTCCGGC
CGGGAAATTGATCCTTCTTGTTACTTGTGTTTATCCCACTGCCCTCCACC
TCTTGTGTTTCCCATTCTTTACCCCGATTCGCATTTCGGTTCTACTCCTC
TCATTTTCATTCATAGCTTTCCACTTTAAGTAATTTTATTACCCCTATTA
TACTCCGCACAATCTTACTTTTTACCTN

Query= MSMg01no363_l01.b1 MSMg01no363_l01.b1 CHROMAT_FILE:
MSMg01no363_l01.b1 PHD_FILE: MSMg01no363_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:29 2005
         (654 letters)



>mm_chr11_39921645_39922698
          Length = 1054

 Score = 1151 bits (595), Expect = 0.0
 Identities = 637/651 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaagagcagcattatgtatagtgaatcctatgcaatgccattctcagttttatt 63
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ggaattcaacagcagcagtatgtatagtgaatcctatgcaatgccattctcagttttatt 795

                                                                       
Query: 64  ttcataaacagatttctgtattgatatttttaaagactaatttttaatttgttatccata 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 794 ttcataaacagatttctgtattgatatttttaaagactaatttttaattttttatccata 735

                                                                       
Query: 124 cctctttgcacataatacacagtagcaatgtaggtttaccaccatgttcctaactagatg 183
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cctatttgcatataatacacagtagcaatgtaggtttaccaccatgttcctaactagatg 675

                                                                       
Query: 184 gattatcatttggactagagttttaactatgtcatctattgacgatcaaggtgacatggc 243
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gattatcattcggactagagttttaactatgtcatctattgacgatcaaggtgacatggc 615

                                                                       
Query: 244 agggatactttccctgagtagacatatacatatttttcgttgtgtcatctataggaaaat 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 614 agggatactttccctgagtagacatatacatattttttgttgtgtcatctataggaaaat 555

                                                                       
Query: 304 atatactaatatctttgattggctcatgtcccttttcttttcattcacatagttcatagt 363
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||
Sbjct: 554 atatactaatatctttgattgactcatgtcccatttcttttcattcacatagttcgtagt 495

                                                                       
Query: 364 agaaaattatgtgtgtagctgcaggttgtatttcactactcagaacatgaataaacatga 423
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agaaaagtatgtgtgtagctgcaggttgtatttcactactcagaacatgaataaacatga 435

                                                                       
Query: 424 tgacagataaagcaataaatataataataaaactctcacacagattacatacaatgaaca 483
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgacagataaagcaataaatagaataataaaactctcacacagattacatacaatgaaca 375

                                                                       
Query: 484 cacatatacacaggcagttacaaggacagtgaatgttaagatgcaagaagtgaggttggt 543
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 374 cacatatacacaggcagttacacggacagtgaatgttaagatgcaagaagtgaggttggt 315

                                                                       
Query: 544 gaaaggacagcctgcaggtgaagcctggtgttaagtggagaaactcatgtctgtccttct 603
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaaagggcagcctgcaggtgaagcctggtgttaagtggagaaactcatgtctgtccttct 255

                                                              
Query: 604 actcttccttatgcacaattgtcaattttccacatcacaaataccctgtgg 654
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 actcttccttatgcacaattgtcaattttccacatcacaaataccctgtgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)