Query= MSMg01no363_l13.b1 MSMg01no363_l13.b1 CHROMAT_FILE:
MSMg01no363_l13.b1 PHD_FILE: MSMg01no363_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:31 2005
(607 letters)
>mm_chr11_21071437_21072443
Length = 1007
Score = 1089 bits (563), Expect = 0.0
Identities = 593/603 (98%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgccccttgcaccaaagccagggaagtcaccatggnggagaaagaaggagag 64
|||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 206 gaattcactgccccaaggaccaaagccagggaagtcaccatgg-ggagaaagaaggagag 264
Query: 65 agcagggagaccaaaatgtctggattatatatagggaagagactctgtctggtggaagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcagggagaccaaaatgtctggattatatatagggaagagactctgtctggtggaagag 324
Query: 125 cagcccagccaatgggctaaaagttcagggctgggggcagggtatgccaggtagggactg 184
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcccaggcactgggctagaagttcagggctgggggcagggtatgccaggtagggactg 384
Query: 185 agggatgctgggagaacctggagaccaggtctgctttgatatgtaaactatgcctatcct 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 agggatgctgggagaacctggagaccaggtctgctttgatgtgtaaactatgcctatcct 444
Query: 245 gaggtctgaaaccaaacagctagtagagaaacatgtgcctgtatatgggactttgaggtg 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 gaggtctgaaaccaaacagctagtagagaaacatgtgcgtgtatatgggactttgaggtg 504
Query: 305 ggaactttgttaacagtattctaaaagtacaagctacagattaatagcttgacaggtttg 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaactttgttaacagtattcaaaaagtacaagctacagattaatagcttgacaggtttg 564
Query: 365 gctgcagcaataataagattgccggtgtatgaatactgtcacaaacttgggcagaggaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctgcagcaataataagattgccggtgtatgaatactgtcacaaacttgggcagaggaca 624
Query: 425 gctgggaagggatacttgtaatgcctcaacccaacaaggagctaaaacccagcttgcaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctgggaagggatacttgtaatgcctcaacccaacaaggagctaaaacccagcttgcaaa 684
Query: 485 ggagctctggtaagtcagacaaggcacacgacagaaatgctgtcgaaggtctaagtggct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggagctctggtaagtcagacaaggcacacgacagaaatgctgtcgaaggtctaagtggct 744
Query: 545 agttctcagaagcattaacctaaatgcttaagagtcaagagaagttcagagtcaccgtaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agttctcagaagcattaacctaaatgcttaagagtcaagagaagttcagagtcaccgtaa 804
Query: 605 tca 607
|||
Sbjct: 805 tca 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_l13.g1 MSMg01no363_l13.g1 CHROMAT_FILE:
MSMg01no363_l13.g1 PHD_FILE: MSMg01no363_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:32 2005
(531 letters)
>mm_chr11_21211752_21212682
Length = 931
Score = 953 bits (493), Expect = 0.0
Identities = 525/537 (97%), Gaps = 7/537 (1%)
Strand = Plus / Minus
Query: 1 atacccaagttttttgtagtaattgtttttagtccaacaacttgcaaagcaccagctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atacccaagttttttgtagtaattgtttttagtccaacaacttgcaaagcaccagctcca 524
Query: 61 agaactaactggcaacttcttgaattgaagtactaacaaaaaa-aaataaataaa-taa- 117
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 523 agaactaactggcaacttcttgaattgaagtactaacaaaaaataaataaataaattaat 464
Query: 118 -aataaaataaggaaaataatcactttgaacagttcattgaagtgttaactgctcacagt 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taataaaataaggaaaataatcactttgaacagttcattgaagtgttaactgctcacagt 404
Query: 177 cacaaagacacccttcctcttctcaccttctcattacaaaacttgaatttatgttttagc 236
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cacaaagacacccctcctcttctcaccttctcattacaaaacttgaatttatgttttagc 344
Query: 237 tggattgttttttctttgaaacagatatcactccacggtgcatgctggcctaagcttact 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tggattgttttttctttgaaacagatatcactccacggtgcatgctggcctaagcttact 284
Query: 297 atataatacaggctggcaattctcctgcctcagcctccaaggtgctgagattagaggact 356
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 283 atataatacaggctagtaattctcctgcctcagcctccaaagtgctgagattagaggact 224
Query: 357 gactcactataatggcctggtattatgaattttctggtt--aaaaaaaaactaattagaa 414
|||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 223 gactcattataatggcctggtattatgaattttctggttaaaaaaaaaaac-aattagaa 165
Query: 415 cctacttatgcatcaattaaaagggagacagcaggtatgctccatactgacttctggtgg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cctacttatgcatcaattaaaagggagacagcaggtatgctccatactgacttctggtgg 105
Query: 475 gagagtgtgaatgagcgggcgctgattctgtgacctcttggggtcctttccctctgt 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gagagtgtgaatgagcgggcgctgattctgtgacctcttggggtcctttccctctgt 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
