BAC Information

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BAC

Clone NameMSMg01-363P22
Chromosome11 (Build37)
Map Location 28,552,713 - 28,553,289
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042377, EG626571, Ccdc85a
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363P22.T7 (MSMg01no363_p22.b1)MSMg01-363P22.TJ (MSMg01no363_p22.g1)
ACCAG472298AG472299
length1,315756
length of high quality
(start - end)		---576 (80 - 655)
definitionCHROMAT_FILE: MSMg01no363_p22.b1 PHD_FILE: MSMg01no363_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:55 2005CHROMAT_FILE: MSMg01no363_p22.g1 PHD_FILE: MSMg01no363_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATGCGAAAGTGGACTGTGCGTCCTCTTTCCCATACTCTCACGCCCCATCC
ATCGACCCGCACCCATTATCTACCCCCGAGCAGTATAAAAGAGACACCGC
AGACTACACCCACTAACGACTATCCGTCGCTACCGTCGAACACCGGACAG
AACACAACTACGGACACGCCAGTTCGCCCTAACCATGCGATACACCATAC
GCAGCATCATCAATGTCAACACTTATCTGGCCGCCACCTTTGTGACGCCG
TGGCGCGCAGCGGNCTGCGTGGAACCTCACGGGTCATCGCCCGCAGATCG
CCTCGCTCGGCGAGTAGAGAGATCTGGTGGCGGCGCGTCGCACACAATTA
TGTCTCGGATCCGAACGTAGCCGTGCAGAGAAAATCTCTAATGCGAGTGC
CAGCGGCCGCGACGTACGAGACGCGATTATTACCTGGGATACGCCATGCG
CGCAGCACTAGATTCCGTATAGATACGGGGCCGCCGCCAATTATTTATTG
CAGGCAACACACACATCCGCCCAGGGTTATAATACCCGGTATGCCGCACC
GCTTTCTATTGCACCCATCGCACGTACTACACCGCCAAAATTGTTTGAAT
ACATGGAAAAACCAATTAGCAAACCCACAAACTAATAAATGTCACATTTC
GGAGTAGATAATACCCCGGCCGATCGTTCGTATCAAGACCGGAAACACGC
GTATAATAGACAGAGTATCAGAAAACGTGGTAGCGCCACCCAGCGCACCA
ACAATATTTTAGGATCGTCACCTTGATCACACACACATAATAAAACGCGT
AGACCAATATATCCAACATACTAGAAACGGCACGGATAAGAGTCAACGAT
CTCGCCCTGATAGAATATACGTCGTCACACGCAAAGCTCTGGTATCCTCA
GACACCCGAGAAGATAAGCCCGCCGCATAAACAAGAGACCGCACCCAGCG
CTCAACGACAATCTAGATATTAATAGCAATAAGGAGAGCACGGGGCGTCA
TCGTTATATGCCACCTACAACGACGAGCCGGCATAATTACTAGTTACTCT
GGATCCGCGCTACGGTCGGTATTGGCGAACGTACGATACATGGCGACCTG
ATAGCGCATTGAGCTTGAGAGTCCATGGCGGTGCGAGCGAATATTATACC
ACAACCGCACGGGGACNGAAGTACTACAATCTGTATTCACTTGTTTTATG
ACTCTTCTCTAAGTGACCTATTCATCGTTTCTTCGCGTTTATTTCCTCGC
TAGCGAGGCGCTGTACTTTCTCACCATCGTGCGGCGGCGCTCTCGTATAG
CGCTTCATTCCATCG

NACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATATTGGGGACTAAATT
AGAAGCTCCATTGGACATAACATCCCCAGAGCTCATGGAAGGTAAAGAAA
ATGAACAGAACCCTATGAGAGACCTTAACTAAGTTGACCTTGGAGACTGG
TATGGACTGGGTGGTGCCCTTCCCCTTAGCCCCATTCTGAGCCCGGAATA
CTCCTTACCATTTTAACCTGACCCCTTTTGAGATCCTGCTTGGTACTCTA
ACTCCCTTGGTGTTCACTGGGCCTCCTAGGAGGTATCCCACAACATGAGA
TTTGGCCCAAACTGTCTGCCTTAAGTGCTCCAGGGATGCGAGAGACCCCT
CACACTGTTCTGCCAATCACATTGTGCCTAATGGCGATGGCTCTGAGAAC
TGTGTAAAGGTGCACTAGATGGGCTGCATGAGGTCATTCTCTCCCCTTGT
GCAGGGTGACCCCAGCATGCCGGATTAAATAAAGTTCCTCTTGCTTTTGT
ATCAATTCCTGTTTACATGTTGTTCCCTCAGGGGTCTCCAGTAAGTTAAG
GCTTTCCAGAGTCTTACAATTAGTCTCCTTGCAGTATTGTGGGGTCAACT
AGTAGATACCATGCTGTTACTTGCATAACTAAATCACTAATGTATAATAT
TGATGTATTATATATTCCTGGCCCCTGAACAAACTGCATTGTATTGAACT
CCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_p22.g1 MSMg01no363_p22.g1 CHROMAT_FILE:
MSMg01no363_p22.g1 PHD_FILE: MSMg01no363_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:55 2005
         (576 letters)



>mm_chr11_28552513_28553489
          Length = 977

 Score = 1046 bits (541), Expect = 0.0
 Identities = 568/577 (98%), Gaps = 1/577 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatattggggactaaattagaagctccattggacataacatccccagagctcatgga 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 agagatattggggactaaattagaagctccattggacgtaacatccccagagctcatgga 260

                                                                       
Query: 61  aggtaaagaaaatgaacagaaccctatgagagaccttaactaagttgaccttggagactg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaaacaaaatgaacagaaccctatgagagaccttaactaagttgaccttggagactg 320

                                                                       
Query: 121 gtatggactgggtggtgcccttccccttagccccattctgagcccggaatactccttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatggactgggtggtgcccttccccttagccccattctgagcccggaatactccttacc 380

                                                                       
Query: 181 attttaacctgaccccttttgagatcctgcttggtactctaactcccttggtgttcactg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 381 attttaacctgaccccttttgagatcctgcttggtactctaactcccttggtgtccacta 440

                                                                       
Query: 241 ggcc-tcctaggaggtatcccacaacatgagatttggcccaaactgtctgccttaagtgc 299
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ggccctcctaggaggtatcccacaacatgagatttggcccaaactgtctgccttaaatgc 500

                                                                       
Query: 300 tccagggatgcgagagacccctcacactgttctgccaatcacattgtgcctaatggcgat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccagggatgcgagagacccctcacactgttctgccaatcacattgtgcctaatggcgat 560

                                                                       
Query: 360 ggctctgagaactgtgtaaaggtgcactagatgggctgcatgaggtcattctctcccctt 419
           ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||
Sbjct: 561 ggctctgagaactgtgtaaaggtccactagatgggcttcatgaggtcattctctcctctt 620

                                                                       
Query: 420 gtgcagggtgaccccagcatgccggattaaataaagttcctcttgcttttgtatcaattc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgcagggtgaccccagcatgccggattaaataaagttcctcttgcttttgtatcaattc 680

                                                                       
Query: 480 ctgtttacatgttgttccctcaggggtctccagtaagttaaggctttccagagtcttaca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtttacatgttgttccctcaggggtctccagtaagttaaggctttccagagtcttaca 740

                                                
Query: 540 attagtctccttgcagtattgtggggtcaactagtag 576
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 attagtctccttgcagtattgtggggtcaactagtag 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space:   547322
Effective search space used:   547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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