BAC Information

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BAC

Clone NameMSMg01-364F02
Chromosome11 (Build37)
Map Location 29,602,435 - 29,602,771
singlet/doubletsinglet
Overlap geneRtn4
Upstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
Downstream geneC230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364F02.T7 (MSMg01no364_f02.b1)MSMg01-364F02.TJ (MSMg01no364_f02.g1)
ACCAG472544AG472545
length769801
length of high quality
(start - end)
432 (49 - 480)338 (79 - 416)
definitionCHROMAT_FILE: MSMg01no364_f02.b1 PHD_FILE: MSMg01no364_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:23 2005CHROMAT_FILE: MSMg01no364_f02.g1 PHD_FILE: MSMg01no364_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGAATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCAATTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGCCTTTCTTCCACTGGATGGGTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGCTCATTTTCTGGCCTTCCATTCTATTCCATT
CGGGTACTTGTCAGTTTCTATACCTATACTCTGGGGCGTTTTATTCCATT
TGCTTCTTTTCATTGCCTTTTCTTTATGCTATGCGGTTTTCCATTCCATT
CTCCCGTTTACTTTTGTACTATTTTTTTCGTTCACCGCCCTACTTATTTC
CCTCTATTCTTCAAACCTT
NTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTTTAGATAATGAGGATTT
TGTTTTCTTTAAATTAATGATTTGAAATACTAACTTAAATGCCTTAGTTG
GCTAAATGCCAAGTTTTTCTATGGGAAATATTCTGGTATTAGTTAAAAAT
AAGATATGTTTTTAAGAGGTTCTTGAAAAAGACTGGCACAATTTTAAGTT
AGTTCATTTTGTGGCTAGTCTTAACAATAGCTTTTCAATCAGTGACTTCT
AACTATATTGTGTAGAGGTACTATTTTGTTAAAAAAAATAAAAAAACTTT
CTTTTTAAATTGCTTCATCTAGTTGAATATGTTGGTTCTGCCTTTTGAGC
CCAAATTTGCTTTTTCTCTTTCTTTCCTTTTTTTTTTTTTTCCTTTCGTG
ATTCTGCAACTGAGAGTAGTAGGATTTACTGTACACAAGATAGTCGTGAC
TACCTGTGAGGTTCGACGTGTTTCTTACGGTCATTGTTATAGGGTCCGCG
CCTACTGTTCTGTTTTTTATGACATTATTCTCTTGTCTCGGTGTTTAGCG
TCAATGTTTAATCTTCTTACCGCCTTAGAATACAATTACAAACTTTTTTC
TTCCTCCCTCTACTTTCCCGCTTTCCTTTCCCTTCTTCACCACTTCACTG
TTTCTTGCCCCTATTCCTCCCTCGCTTTCAGTTATATTTAATCCCTGCCA
CGACCTTTCTTTTCCTCCCTTTCATTTTTACCACCTCGCTCCCATCCACC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_f02.g1 MSMg01no364_f02.g1 CHROMAT_FILE:
MSMg01no364_f02.g1 PHD_FILE: MSMg01no364_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:23 2005
         (338 letters)



>mm_chr11_29602235_29602971
          Length = 737

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%), Gaps = 1/338 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtttagataatgaggattttgttttctttaaattaatgatttgaaatactaacttaa 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtttagataatgaggattttattttctttaaattaatgatttgaaatactaacttaa 260

                                                                       
Query: 61  atgccttagttggctaaatgccaagtttttctatgggaaatattctggtattagttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgccttagttggctaaatgccaagtttttctatgggaaatattctggtattagttaaaa 320

                                                                       
Query: 121 ataagatatgtttttaagaggttcttgaaaaagactggcacaattttaagttagttcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagatatgtttttaagaggttcttgaaaaagactggcacaattttaagttagttcatt 380

                                                                       
Query: 181 ttgtggctagtcttaacaatagcttttcaatcagtgacttctaactatattgtgtagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtggctagtcttaacaatagcttttcaatcagtgacttctaactatattgtgtagagg 440

                                                                       
Query: 241 tactattttgttaaaaaaaataaaaaaactttctttttaaattgcttcatctagttgaat 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactattttgttaaaaaaa-taaaaaaactttctttttaaattgcttcatctagttgaat 499

                                                 
Query: 301 atgttggttctgccttttgagcccaaatttgctttttc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgttggttctgccttttgagcccaaatttgctttttc 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 737
Length adjustment: 9
Effective length of query: 329
Effective length of database: 728
Effective search space:   239512
Effective search space used:   239512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)