BAC Information

Click to search

BAC

Clone NameMSMg01-365C21
Chromosome11 (Build37)
Map Location 82,084,617 - 82,269,254
singlet/doubletdoublet
Overlap geneTmem132e
Upstream geneAccn1, 1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1
Downstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365C21.T7 (MSMg01no365_c21.b1)MSMg01-365C21.TJ (MSMg01no365_c21.g1)
ACCAG473198AG473199
length802738
length of high quality
(start - end)		441 (60 - 500)491 (57 - 547)
definitionCHROMAT_FILE: MSMg01no365_c21.b1 PHD_FILE: MSMg01no365_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:36 2005CHROMAT_FILE: MSMg01no365_c21.g1 PHD_FILE: MSMg01no365_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,084,617 - 82,085,052)(82,268,764 - 82,269,254)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGA
ACTCTTCGTATGTTGAGGGAGGAATGGGTTTCTTGCAAACTTCTTTCCCC
TAGACGTCTTGCAAGAACTCTCTTCCAAGGACCTCTCTTTGCAAGTCCTG
ATTTAGCTTACTGTTCTATCTTACTGAGAAGAATTCTGCAAATGAAGGAC
CCAACACCAGAGGGCTCCCAGCAACAAAACTGGAAGGGTGTCCTAGGAGC
CCTTATTTCACCAAAGCCCCCTGCCCCTGCCTACCCTCTCTAGCTGGAAG
CCTCACCTGGCTCCTAAGCTGGGCAGAGAGAAGGACCTTAAACAGCAGGT
AGGATGGAATCCTTGGTCCCAGGATCTTCTGTAAAGGTTCAAGTCCTTAG
AGCTGAGGAGTCATGGAGGTGAAGTCTCATGCCAGCCCTAGACCCAGTTG
CAGATGCCTCTGGGCCTCTAAGATGTACCACCTCACTCAAGAACTAATCC
CATCATTTTCTCTCTCTCTCTCTGATCCAAAGCTTAAAAAAAGTCTGAGC
CAACTCCCATATCTTCTTTCTACTAGGGAACCCACCTCTTACTCATCCCT
TTTTCAGGAACGTAACCGGTATTATCTTTGTCCTCCATCCACTTTCCAAG
TTGAGATGTTTTTTATTTGACAGCTGTTAGTTTCTGTTCTTTAGAGCATT
CATTTTCATTTGCTCCCCTTTTTATTCTGTTTTTTTCCCACTTTTTTTTT
TCCCTTTTTTCTTCCCTTCCTTCTTTTTTTCCCCTCCTTCTTATTTTCCC
CG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGGAGGCCTCCCAGTCTGCATAGGCCCCCACAAGAGAGGAACTA
AGAGTGGGTATTCCTCTGTCAGATAGGTGACATATGTACAGAGTCCCTCA
GAGTCTCAGTATTGTATTCATATCCCATTTTGGCTGGAGTGCATTGTGGG
ATAGTAAAGGCTAGAGGTTTGATTTTGTTTTGACTGTAACTTCTACTTCC
AGCTGAGATGAGAGAGTGGGCTTATTTATTTTTAAAAGTAGGCCTCTCCT
GGTGTGACTTGGGAGGGATCCCTGCTCAGTTTTGGAACTGAAGGAAAGGG
ACAAAATGGCCTAGGATAAGACTTAAATGCTATCATTTCCCCCACTCCCC
ATCCCCGGAAGTTGATCTTTGTGCAGTTTTGGCCTCCCTAAGAATGGAAT
GACGTCAGCAGGCAAACACATTTCTCCCTCTGAACAGCATTTTGGGAGGC
TGTGGACTTCTCAAAGCTCATCCCCTGGGCCTACCTCCCTTCCAAGATGC
TATGAAAGTATGTGAGGCCTTACACGTGACCCCCTCACTCCTGTATCACC
TTCTCCTGCTTCCCCTATTGGTGACCATCTTAGGATTCTGGACTCCCCCT
GGCAGTCTAAAAGAATGGCTTGGTGTCCTGGGCTCCTACCATTTTTTAAC
CACTTCTCTAACCCGAAGTACTGGAAAAATGGGGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_c21.b1 MSMg01no365_c21.b1 CHROMAT_FILE:
MSMg01no365_c21.b1 PHD_FILE: MSMg01no365_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:36 2005
         (441 letters)



>mm_chr11_82084417_82085257
          Length = 841

 Score =  828 bits (428), Expect = 0.0
 Identities = 434/436 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttgagggaggaatgggtttcttgcaaacttctttcccctagacgtcttgcaagaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttgagggaggaatgggtttcttgcaaacttctttcccctagacgtcttgcaagaact 260

                                                                       
Query: 61  ctcttccaaggacctctctttgcaagtcctgatttagcttactgttctatcttactgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttccaaggacctctctttgcaagtcctgatttagcttactgttctatcttactgaga 320

                                                                       
Query: 121 agaattctgcaaatgaaggacccaacaccagagggctcccagcaacaaaactggaagggt 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataattctgcaaatgaaggacccaacaccagagggctcccagcaacaaaactggaagggt 380

                                                                       
Query: 181 gtcctaggagcccttatttcaccaaagccccctgcccctgcctaccctctctagctggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcctaggagcccttatttcaccaaagccccctgcccctgcctaccctctctagctggaa 440

                                                                       
Query: 241 gcctcacctggctcctaagctgggcagagagaaggaccttaaacagcaggtaggatggaa 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctcacctggctccaaagctgggcagagagaaggaccttaaacagcaggtaggatggaa 500

                                                                       
Query: 301 tccttggtcccaggatcttctgtaaaggttcaagtccttagagctgaggagtcatggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccttggtcccaggatcttctgtaaaggttcaagtccttagagctgaggagtcatggagg 560

                                                                       
Query: 361 tgaagtctcatgccagccctagacccagttgcagatgcctctgggcctctaagatgtacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagtctcatgccagccctagacccagttgcagatgcctctgggcctctaagatgtacc 620

                           
Query: 421 acctcactcaagaact 436
           ||||||||||||||||
Sbjct: 621 acctcactcaagaact 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_c21.g1 MSMg01no365_c21.g1 CHROMAT_FILE:
MSMg01no365_c21.g1 PHD_FILE: MSMg01no365_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:37 2005
         (491 letters)



>mm_chr11_82268564_82269454
          Length = 891

 Score =  926 bits (479), Expect = 0.0
 Identities = 488/491 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaggcctcccagtctgcataggcccccacaagagaggaactaagagtgggtattcctc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 691 aggaggcctcccagcctgcataggcccccacaagagaggaactaagagtgggtgttcctc 632

                                                                       
Query: 61  tgtcagataggtgacatatgtacagagtccctcagagtctcagtattgtattcatatccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 631 tgtcagataggtgacatatgtacagagtccctcagagtctcagtattgtatccatatccc 572

                                                                       
Query: 121 attttggctggagtgcattgtgggatagtaaaggctagaggtttgattttgttttgactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 attttggctggagtgcattgtgggatagtaaaggctagaggtttgattttgttttgactg 512

                                                                       
Query: 181 taacttctacttccagctgagatgagagagtgggcttatttatttttaaaagtaggcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 taacttctacttccagctgagatgagagagtgggcttatttatttttaaaagtaggcctc 452

                                                                       
Query: 241 tcctggtgtgacttgggagggatccctgctcagttttggaactgaaggaaagggacaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcctggtgtgacttgggagggatccctgctcagttttggaactgaaggaaagggacaaaa 392

                                                                       
Query: 301 tggcctaggataagacttaaatgctatcatttcccccactccccatccccggaagttgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tggcctaggataagacttaaatgctatcatttcccccactccccatccccggaagttgat 332

                                                                       
Query: 361 ctttgtgcagttttggcctccctaagaatggaatgacgtcagcaggcaaacacatttctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctttgtgcagttttggcctccctaagaatggaatgacgtcagcaggcaaacacatttctc 272

                                                                       
Query: 421 cctctgaacagcattttgggaggctgtggacttctcaaagctcatcccctgggcctacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cctctgaacagcattttgggaggctgtggacttctcaaagctcatcccctgggcctacct 212

                      
Query: 481 cccttccaaga 491
           |||||||||||
Sbjct: 211 cccttccaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |