BAC Information

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BAC

Clone NameMSMg01-365G19
Chromosome11 (Build37)
Map Location 116,384,506 - 116,384,917
singlet/doubletsinglet
Overlap genenone
Upstream geneSumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971
Downstream geneSphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365G19.T7 (MSMg01no365_g19.b1)MSMg01-365G19.TJ (MSMg01no365_g19.g1)
ACCAG473382AG473383
length777745
length of high quality
(start - end)		496 (37 - 532)411 (57 - 467)
definitionCHROMAT_FILE: MSMg01no365_g19.b1 PHD_FILE: MSMg01no365_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:55 2005CHROMAT_FILE: MSMg01no365_g19.g1 PHD_FILE: MSMg01no365_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGG
ACTTGCGGGTTGCATCGACCCCCCGGTGTGGCACCCTGGACGCTACCGGA
GACCACTGAGGAATCATAACAGGGGCCCTGACCCCTAGGAGTGTTTCCTC
GCTTAAGGGAAATTAGGTCCCATGATGATGATGGCTTCCAGTATGCCTGT
CCAGTGGTCTCACATCCCCATTTGCCACAGTAGCCCTCTCTCGGCCCTCC
ACACCCTGTTAGTACAGTATGACCGGGGCAAACATAGAAATCAAATGTTC
TTGTCCTTTTTCTTCCCCCGGGAGAGCGGCAACCATGTCCACTAGAGGAT
TCCGGGTCATCCCAGTTGTCTCCAACTAAATCACACAAGTCAAAATATAG
TTTAGGGAAGGTATCTGTCATCGTCCCCAGGAGGGAGGTAGCGTTAGCTG
TTTGTCCTGTCATTAGGTTGGTAATTCTCCAAGTGACATTGAAGACCTGG
TGAGGGCTGTCACGTTGTACCGAGGCTCCTGCCCTCACCCAGATCCCCAT
ATCTATCATGGGGCCCTCCGGGTTAATCTTATCTTTAAGTGTTTTTGAGA
ATGCTGGACTTTTCATGCTGCTCTGTCCCCGAAGACGTGTCCCCTTTTTT
TTCTTTATCGCTGTGTATCCATTCCTAACACTGCCCCCTTTCTTTTATTC
GCTTTTGTTTTGTTTATTTCCCGCTTTTGTTATTCCTTTCTCTTCCGGCC
TTCATGTTTCCTTTCTCTGTTTTCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAAGGCTTTGACCTTCAGGAACCGAGCCTCCAGGGAAGGGGAAGT
TCTATTTTTGGGATGTGGATAATGAGAGAGAGGAGCAGGCAAGCCTTGCT
CCTGGCTTTGTGGTATCTTTTCCAGCTTGATGAATCAGGGCATCTGCCTC
CCTCTCCCTCTATTGCCCCTGGCCCTCAATAATTTGGCTACAACTGTGGC
AGCCCAATAGGTGTGCATTTGTACAAAAGAAATGTACGCCCCTAAGGGCA
GCATTCCCAAAGTCTCCTGTGCTTGTGGAGGGACCCCATCAGGTAGGTGA
ACATGGCCCCAGAGCATTAGCACGAAGTCACTGTTTGGCTGGGGGCCAGA
GCCAACCCACTGTCTGTCTGTTTGCTTTGGGTAACACCCAAGGACACACA
TTCTGAGGACTGTGAAAGTAGAAAACACTTTCAAACCAAAAAGCACGGGG
AAAAACACGCACACACCCACCCTCTCGGAGCCCAATCTCTACACTGGGTT
CCTGGGAATGAAAGGGACCCCTGCTTCCCAATCCCTGAATGGCAGGGGGC
GTGAATCCTGCTTCTGGAGCCCCCCCCCTTTTCTAGGAATGGCCAATCTG
TGGGGGTGGGAAAAATCCCTCTGTCCAGAGAGATAGCCTCTCAAATAGAT
TACCTGAACAAACCTAAAATATTCCCCTTGTCTGGATCTATATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_g19.g1 MSMg01no365_g19.g1 CHROMAT_FILE:
MSMg01no365_g19.g1 PHD_FILE: MSMg01no365_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:55 2005
         (411 letters)



>mm_chr11_116384306_116385117
          Length = 812

 Score =  735 bits (380), Expect = 0.0
 Identities = 404/412 (98%), Gaps = 1/412 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggctttgaccttcaggaaccgagcctccagggaaggggaagttctatttttgggatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctttgaccttcaggaaccgagcctccagggaaggggaagttctatttttgggatgt 260

                                                                       
Query: 61  ggataatgagagagaggagcaggcaagccttgctcctggctttgtggtatcttttccagc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ggataatgagagagaggagcaggcaagcctcgctcctggctttgtggtatcttttccagc 320

                                                                       
Query: 121 ttgatgaatcagggcatctgcctccctctccctctattgcccctggccctcaataatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgatgaatcagggcatctgcctccctctccctctattgcccctggccctcaataatttg 380

                                                                       
Query: 181 gctacaactgtggcagcccaataggtgtgcatttgtacaaaagaaatgtacgcccctaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctacaactgtggcagcccaataggtgtgcatttgtacaaaagaaatgtacgcccctaag 440

                                                                       
Query: 241 ggcagcattcccaaagtctcctgtgcttgtggagggaccccatcaggtaggtgaacatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ggcagcattcccaaagtctcctgtgcttgtggagggaccccatcaggtaagtgaacatgg 500

                                                                       
Query: 301 ccccagagcatta-gcacgaagtcactgtttggctgggggccagagccaacccactgtct 359
           ||||||| ||  | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ccccagatcacgaagcacgaagtcactgtttggctgggggccagagctaacccactgtct 560

                                                               
Query: 360 gtctgtttgctttgggtaacacccaaggacacacattctgaggactgtgaaa 411
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 gtctgtttgctttgggtaacacccaaggacacacattctgaggcctgtgaaa 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space:   322806
Effective search space used:   322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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