Query= MSMg01no366_h13.b1 MSMg01no366_h13.b1 CHROMAT_FILE:
MSMg01no366_h13.b1 PHD_FILE: MSMg01no366_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:20 2005
(545 letters)
>mm_chr11_17403839_17404784
Length = 946
Score = 971 bits (502), Expect = 0.0
Identities = 535/546 (97%), Gaps = 1/546 (0%)
Strand = Plus / Plus
Query: 1 attctttcttttccctgccttttgtctggaattccagtctgtgggcctttgacagtcact 60
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 attctttcttttctttgccttttgtctagaattccagtctgtgggcctttgacagtcact 260
Query: 61 gttcttctgctacaataacaccgtctgggtcatttacaaagaaaagacgtttacttagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcttctgctacaataacaccgtctgggtcatttacaaagaaaagacgtttacttagct 320
Query: 121 catgatacttgaagttcgtaaatccagggacacaacaactatctatgtaaagagtctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgatacttgaagttcgtaaatccagggacacaacaactatctatgtaaagagtctttg 380
Query: 181 tgctacatcataatgtggtaaaaaaaa-tggcagagggcaaagtgaaatagcaaggggac 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tgctacatcataatgtggtaaaaaaaaatggcagagggcaaagtgaaatagcaaggggac 440
Query: 240 aaatagcaatctgctttctaaataatgggttctctcctgtgataacacatctgtgtatcc 299
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 441 aaatagcaatctgctttctaaataatgggcgcactcctgtgataacacatctgtgtatcc 500
Query: 300 atgtaagctgtcttcatgacccaagaatccttcactacgcctcgtctcccaacaacgctg 359
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 atgtaagctgtcttcatgatccaagaacccttcactacgcctcgtctcccaacaacgctg 560
Query: 360 tttggaggaaaactgactcagcacatgatccaaaggatacattcaaattatagcagcctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttggaggaaaactgactcagcacatgatccaaaggatacattcaaattatagcagcctc 620
Query: 420 ctagtgtaacaccattccttccttataaggaaaagcactgagagccataggacaaaggtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ctagtgtaacaccattccttccttataaggaaaagcactgagagccataggacaaagttg 680
Query: 480 tcttttctgagttagggaggaagctggagcatactgtgtacttttcaggcagggggacca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 tcttttctgagttagggaggaagctggagcatactgtgtacttttcaggcaggggaacca 740
Query: 540 atgata 545
||||||
Sbjct: 741 atgata 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space: 500760
Effective search space used: 500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_h13.g1 MSMg01no366_h13.g1 CHROMAT_FILE:
MSMg01no366_h13.g1 PHD_FILE: MSMg01no366_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:20 2005
(521 letters)
>mm_chr11_17578873_17579793
Length = 921
Score = 1007 bits (521), Expect = 0.0
Identities = 521/521 (100%)
Strand = Plus / Minus
Query: 1 tcttcattcatttcaacaactgcctatcttgtcatctctcacatttcaaagtccccatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcttcattcatttcaacaactgcctatcttgtcatctctcacatttcaaagtccccatga 662
Query: 61 cctagataatttcctgatcaccttatttcaggcattcttattcacagggttattaccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cctagataatttcctgatcaccttatttcaggcattcttattcacagggttattaccagg 602
Query: 121 tccagcatcttttattgttgggtttggaccctccacagaatgctagaattttctttgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tccagcatcttttattgttgggtttggaccctccacagaatgctagaattttctttgtat 542
Query: 181 atcagtttcctttggggcatcctgcactgtgatcactcagggtcttccctctccaaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcagtttcctttggggcatcctgcactgtgatcactcagggtcttccctctccaaatca 482
Query: 241 tcactgtgaatttttcctgaggttgtgacagcaatagaactcagttcatctgaccttgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcactgtgaatttttcctgaggttgtgacagcaatagaactcagttcatctgaccttgta 422
Query: 301 tctcaagggtcattgtcctttgatgaatatgtctactgtgcaaaaatatcatttcttatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctcaagggtcattgtcctttgatgaatatgtctactgtgcaaaaatatcatttcttatg 362
Query: 361 tgtggaattaagaagtctcttggaatttatggacattacataatcctcaagctggctata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtggaattaagaagtctcttggaatttatggacattacataatcctcaagctggctata 302
Query: 421 taaggaacatttctaatgggtaataaaatggtagctaggtgggatgggaaacatagaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaggaacatttctaatgggtaataaaatggtagctaggtgggatgggaaacatagaaag 242
Query: 481 aaaaaaaatgcatcattaaatctaactccttagctatgcag 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaaaaaatgcatcattaaatctaactccttagctatgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
