BAC Information

Click to search

BAC

Clone NameMSMg01-366H14
Chromosome11 (Build37)
Map Location 89,549,385 - 89,592,658
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366H14.T7 (MSMg01no366_h14.b1)MSMg01-366H14.TJ (MSMg01no366_h14.g1)
ACCAG474178AG474179
length777762
length of high quality
(start - end)		501 (47 - 547)507 (78 - 584)
definitionCHROMAT_FILE: MSMg01no366_h14.b1 PHD_FILE: MSMg01no366_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:20 2005CHROMAT_FILE: MSMg01no366_h14.g1 PHD_FILE: MSMg01no366_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,549,385 - 89,549,879)(89,592,152 - 89,592,658)
sequence
NNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTCTTATCTTAAGTTAGAAAACCACATCTTCTGCACTCTCTAA
GCAATTCTTTTCCTACTGAAATCAAAATGAAAATTTAAGCATTTTATTTG
CTTGAAAATATCTTCTTTGCACAGTACTCTTTTAGTTTTCTTTGTAGGCT
ATGAGTCCACCACTCATCGTTCTAAACACACATGCTAGAGACTGTTAAAT
AGCTTAATTGGACATTGAAGGATCATGTCCCCGTATGGAGAGCTACTGAC
TATTTAGAAATTAGCATTTAACAATAATTAATTATTATTAAATTGCATTC
TGCAGAGTCTGTGTATTATTTACAAGTCAGAGGTCAAATTTGATAGGCAG
AAAACTTTATTTAAGCTTAAGACAGACTTAACCAGGCATGGTGGTACATG
CTTATCAGTTCAGCAGTCAGGAGGCAGAGGCAGGAGGATTCTTGCTAGTC
TGAGAACAGCTTGAGCTACTGTGAGTCCCAGGCCAGCCACAGCTACATAA
TANGAAGCTGTCTCAAGAGAACAAAATTAACAAAAAGCAACCTACCAGGG
CAGGAGAGATGGCCTCAGGGGTAAGAGAACTGATGATTCTTCCAGAGGCC
CGGAATTCAATTCCCAGCAACCCCTTGAAAAGGTAATAAAAAACCGAAGC
CCCCTTCTTGGATGGTTGAAAAAAAGGGCAAGGACCCCTTTTTTTTTTTT
AAACACACCTAACAAAAAACTGGCGAA

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCGCAGCTTTTAAAAAGGAAA
GGTAAAAGCGTGGGAAGGGCTCTACTTCCCATCAGATTTTCCATAGAAAA
GAAGCCCATGGAGCTGGGCTGTGCAGGCTTGTCTACATGTCTAGACTTGG
ATGGAACCATGTGTCTGATATGTAGCCTCTGTGTATTTCGGCATTCTCAC
ACATGAAGTGGGAAGTATAAGATGACTTTCCTTATGGAACTGCTGTAATG
AAACAATGTGCTCTTGGGCATCACTCCTGTGGTATAAATGGCAGGGACAT
TAATAGGAACATTAGAATGGGAGTATTGGCGGCAGTTACTGTTACCGTTA
CTGTACAAGTCAAAGAGACGGTCACGAAGCCACAGAGAGAGAATCTTTGT
GCACTGACATTTGAGTAGAGCAGATAGACACAGGAGGAAGAGAAATAATT
AACTACTTCCCAGTAGCACGCTATAGAGAGCAGAAAGTGGTCCAGAGGCC
ATTGAATTAAAAAAGGTTCATTCTGTTGATTAAAAACAACCAACAAACAA
GCCGGGTGTGGGGGCGCACACCTTTTATCCCAGCACTCGGGAGACAGAGC
CAGGCGGATTTTCTGATTCGAGGCCAGCCTGGTCTAAAAGTGAGTTCCAG
AACAGCCAGGGCATACAGAAAACCCCTGTCTCCTAAAACAAACAATCTAT
CATCAAATAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_h14.b1 MSMg01no366_h14.b1 CHROMAT_FILE:
MSMg01no366_h14.b1 PHD_FILE: MSMg01no366_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:20 2005
         (501 letters)



>mm_chr11_89549179_89550079
          Length = 901

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctcttatcttaagttagaaaaccacatcttctgcactctctaagcaattcttttc 66
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcttagcttaagttagaaaaccacatcttctgcactctctaagcaattcttttc 266

                                                                       
Query: 67  ctactgaaatcaaaatgaaaatttaagcattttatttgcttgaaaatatcttctttgcac 126
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctactaaaatcaaaatgaaaatttaagcattttatttgcttgaaaatatcttctttgcac 326

                                                                       
Query: 127 agtactcttttagttttctttgtaggctatgagtccaccactcatcgttctaaacacaca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agtactcttttagttttctttgtaggctatgagtccaccactcatcgttctaaacacaca 386

                                                                       
Query: 187 tgctagagactgttaaatagcttaattggacattgaaggatcatgtccccgtatggagag 246
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 tgctagagactgttaaatagcttaattggacattgaaggatcatgtccccatatggagag 446

                                                                       
Query: 247 ctactgactatttagaaattagcatttaacaataattaattattattaaattgcattctg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctactgactatttagaaattagcatttaacaataattaattattattaaattgcattctg 506

                                                                       
Query: 307 cagagtctgtgtattatttacaagtcagaggtcaaatttgataggcagaaaactttattt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cagagtctgtgtattatttacaagtcagaggtcaaatttgataggcagaaaactttattt 566

                                                                       
Query: 367 aagcttaagacagacttaaccaggcatggtggtacatgcttatcagttcagcagtcagga 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aagcttaagacagacttaaccaggcatggtggtacatgcttatcagttcagcagtcagga 626

                                                                       
Query: 427 ggcagaggcaggaggattcttgctagtctgagaacagcttgagctactgtgagtcccagg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggcagaggcaggaggattcttgctagtctgagaacagcttgagctactgtgagtcccagg 686

                          
Query: 487 ccagccacagctaca 501
           |||||||||||||||
Sbjct: 687 ccagccacagctaca 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_h14.g1 MSMg01no366_h14.g1 CHROMAT_FILE:
MSMg01no366_h14.g1 PHD_FILE: MSMg01no366_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:20 2005
         (507 letters)



>mm_chr11_89591952_89592858
          Length = 907

 Score =  973 bits (503), Expect = 0.0
 Identities = 506/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcgcagcttttaaaaaggaaaggtaaaagcgtgggaagggctctacttcccatcagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgtcgcagcttttaaaaaggaaaggtaaaagcgtgggaagggctctacttcccatcagat 648

                                                                       
Query: 61  tttccatagaaaagaagcccatggagctgggctgtgcaggcttgtctacatgtctagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tttccatagaaaagaagcccatggagctgggctgtgcaggcttgtctacatgtctagact 588

                                                                       
Query: 121 tggatggaaccatgtgtctgatatgtagcctctgtgtatttcggcattctcacacatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tggatggaaccatgtgtctgatatgtagcctctgtgtatttcggcattctcacacatgaa 528

                                                                       
Query: 181 gtgggaagtataagatgactttccttatggaactgctgtaatgaaacaatgtgctcttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtgggaagtataagatgactttccttatggaactgctgtaatgaaacaatgtgctcttgg 468

                                                                       
Query: 241 gcatcactcctgtggtataaatggcagggacattaataggaacattagaatgggagtatt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gcatcacgcctgtggtataaatggcagggacattaataggaacattagaatgggagtatt 408

                                                                       
Query: 301 ggcggcagttactgttaccgttactgtacaagtcaaagagacggtcacgaagccacagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggcggcagttactgttaccgttactgtacaagtcaaagagacggtcacgaagccacagag 348

                                                                       
Query: 361 agagaatctttgtgcactgacatttgagtagagcagatagacacaggaggaagagaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agagaatctttgtgcactgacatttgagtagagcagatagacacaggaggaagagaaata 288

                                                                       
Query: 421 attaactacttcccagtagcacgctatagagagcagaaagtggtccagaggccattgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 attaactacttcccagtagcacgctatagagagcagaaagtggtccagaggccattgaat 228

                                      
Query: 481 taaaaaaggttcattctgttgattaaa 507
           |||||||||||||||||||||||||||
Sbjct: 227 taaaaaaggttcattctgttgattaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |