Query= MSMg01no366_k15.b1 MSMg01no366_k15.b1 CHROMAT_FILE:
MSMg01no366_k15.b1 PHD_FILE: MSMg01no366_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:34 2005
(514 letters)
>mm_chr11_112821029_112821942
Length = 914
Score = 787 bits (407), Expect = 0.0
Identities = 475/517 (91%), Gaps = 32/517 (6%)
Strand = Plus / Plus
Query: 1 tgtgaagatcctaggagccagaagaggagcgggatgccctccttaagatagaatctt--- 57
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 227 tgtgaagatcctaggagccagaagaggggcgggatgccctccttaagatagaatcttctt 286
Query: 58 gacagaacggggaagctgcatccaggaaacttcatcagtatgtttgcctacataagccct 117
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gacagaaccgggaagctgcatccaggaaacttcatcagtatgtttgcctacataagccct 346
Query: 118 gcataatgccaataaataagtaaataaataaataaataaataaataaataaataaataaa 177
||||||||||||||||||| ||||||||| |||
Sbjct: 347 gcataatgccaataaataa----------------------------ataaataaacaaa 378
Query: 178 taaataaataaataaaattgacatatcatgccgatgttaagtggggacatttccctagga 237
||| ||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 caaacaaacaaacaaacttgacatatcatgccgatgt-aagtggggacatttccctagga 437
Query: 238 actaaccctggattataaactacaggcaaccagtggctgctcagagagagaatctgtttt 297
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 actaaccctggatgagaaactacaggcaaccagtggctgctcagagagagaatctgtttt 497
Query: 298 cttcttctggtgcactgcccttagggactcagcgctagcagccatgacatcacccactgc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttcttctggtgcactgcccttagggactcagcgctagcagccatgacatcacccactgc 557
Query: 358 gccaaatggaacacatttctaatgtcactaagttctgtattttccctacacaacatatgc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gccaaatggaacacatttctaatgtcactaagttctgtattttccctacacaacatatgc 617
Query: 418 accctttaaaagccacctcccaccgctgaccccctgccctcagggccctctctctatctc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 accctttaaaagccacctcccaccgctgaccccctgccctcagggccctctctctatctc 677
Query: 478 caagtctttcattcctcccacctccctcatctctgtt 514
|||||||||||||||||||||||||||||||||||||
Sbjct: 678 caagtctttcattcctcccacctccctcatctctgtt 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_k15.g1 MSMg01no366_k15.g1 CHROMAT_FILE:
MSMg01no366_k15.g1 PHD_FILE: MSMg01no366_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:34 2005
(449 letters)
>mm_chr11_113005389_113006237
Length = 849
Score = 806 bits (417), Expect = 0.0
Identities = 441/449 (98%)
Strand = Plus / Minus
Query: 1 actccagcccagagagaccttgatcttttgatctctgggctacagcgtcctgagcatcca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 649 actccagcccagagagaccttgatcttttgatctctgtgctacagcgtcctgagcgtcca 590
Query: 61 ggacccttggcctgcaccaccagtcctggtcttactctctaattcttggggtcactgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggacccttggcctgcaccaccagtcctggtcttactctctaattcttggggtcactgtga 530
Query: 121 gccctgggcaaagactgtgccttcttttccaatctccacgagtctcccctcaggctttgg 180
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 529 gccctgggcaaagactgtaccttcttttccaatctccaggagtctcccctcaggctttgg 470
Query: 181 tgtagggagtccgggcagagagctcttcagcgccttccggctcactgactccgtgataag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgtagggagtccgggcagagagctcttcagcgccttccggctcactgactccgtgataag 410
Query: 241 gtttttatggatggattgcatgtcaggttgcttggaaacaggatggaaactggccaggca 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gttccgatggatggattgcatgtcaggttgcttggaaacaggatggaaactggccaggca 350
Query: 301 gccctcaaagccgtattcctgagctcccaggaccagcagcacatttgaatgagtctgata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gccctcaaagccgtattcctgagctcccaggaccagcagcacatttgaatgagtctgata 290
Query: 361 aagcctctttgctgcccctcctccccatccaaagaggacatgagcagagacggggcctcc 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aagcccctttgctgcccctcctccccatccaaagaggacatgagcagagacggggcctcc 230
Query: 421 gcacagataagcttcgtgaagggagatgg 449
|||||||||||||||||||||||||||||
Sbjct: 229 gcacagataagcttcgtgaagggagatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
