BAC Information

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BAC

Clone NameMSMg01-367B02
Chromosome11 (Build37)
Map Location 88,805,698 - 88,806,156
singlet/doubletsinglet
Overlap geneScpep1
Upstream geneSfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1
Downstream geneOTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367B02.T7 (MSMg01no367_b02.b1)MSMg01-367B02.TJ (MSMg01no367_b02.g1)
ACCAG474628AG474629
length739743
length of high quality
(start - end)
562 (51 - 612)459 (73 - 531)
definitionCHROMAT_FILE: MSMg01no367_b02.b1 PHD_FILE: MSMg01no367_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:07 2005CHROMAT_FILE: MSMg01no367_b02.g1 PHD_FILE: MSMg01no367_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTAGTCTAATGCTGGTCTTTGCCCCACCTTATGCATATT
GCAGAGGACTGAGGCCTTCTGGATTATTTCTAGGAATAAACAAAACAGAT
TCTAGGAACACCTACCCTATAATCCCTTTCCAAATGCCCTTGCTTACCAC
AGTTAAGACATCTGACAGTTTGATTTTTTTCTTAAGACTTTTAGAATTTA
CTATCAGATTAGCATCATAAATGTGAGATCCAATATCTCTAATCTATTCT
ATTGGTGCTGATGGTGCCTAATCATCCTTTTGCATTCTGAACTAGCATTT
TCAAAAGCCAAGGATTCAATTAATATTTTTCTGACTTCTGAATCTGATTC
TCTTTATAACTGAAGTCAATCTTTGCAAAAATCAGGGAAGGCTGCTTTGG
GGCCTTGTGTATTTTAAGGAAAAGACTCACACCTTTCTTGGTTCTTCAAC
CTCATCTCAAGCATTAAAAAGCTGCTAAATGACATAGCATCAAAGTGTGA
TCATCAAATTCAAGCTGCCTTCCTAAATCTTTTTTTGTTGTTGTTGTTGT
TGTTATTGTTGNTTGTNTGTGCTCTCTATTCCTCTTTCCCTCCTTCTCCC
TTCTTCCTTTCCCTTCCTTTTTCCTCCTCCCCTTTTTTTCTCCCTTTTTT
CTTTCCCCTCTCCCTTCCTTTTCCTATCTTCCCTTTTTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATGGCAATCAAAGAAGGATTTCAGG
AGAACCATCATGTCGGAAGCCACCGTGTCCAGGTCCTTTGCGTAGGCATC
TGTTGTGTTGACGTAGCTGAAGCCCGTGCCCACGGGATTATCCACAAACA
GGAGACTGGCCCACTGCAGCTGCAGCCACCCAGAAGGAGCAAGCAGGGCA
ATTGGTGGTTAGTCATCAGTTATCTTCCTGGCAACTTTGCAAAACCACCT
TTATGATAACATCAGCGTGGTGACTTTATCTTATTGCTCAAAGTGATTTG
GGGGCAGCTGGGGAAATGGCCCAGTTAGGAAATTGCTTGCCTTATGAGCA
TGAGGCCCTGAGTTCCATGACGAGAATCCATGAAAAAAAGTTGGACAAGC
CTGGTGGCAGGGCACGCCTTGAATCCCAGCACTGGGGAGGCAGAGGCAGG
TGGATCTCTTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA
TAGCCAGGACTACTCAGAGAAATGTTCTCTAGGAATTCTCCCTTTTTTTT
ACACTTAAGCCAGGCTTGGTAACTAATACCACCCCTGTTTTCCCCAGTGC
TTGCCAAGGAGGATACAGAAACCCTGGTTCTTCCTCTCCCATGGTACTCT
AACGGAATAATTTTAATTCCCCTTTCGAATATTATTTCCTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_b02.g1 MSMg01no367_b02.g1 CHROMAT_FILE:
MSMg01no367_b02.g1 PHD_FILE: MSMg01no367_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:07 2005
         (459 letters)



>mm_chr11_88805498_88806356
          Length = 859

 Score =  833 bits (431), Expect = 0.0
 Identities = 452/459 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatggcaatcaaagaaggatttcaggagaaccatcatgtcggaagccaccgtgtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatggcaatcaaagaaggatttcaggagaaccatcatgtcggaagccaccgtgtccag 260

                                                                       
Query: 61  gtcctttgcgtaggcatctgttgtgttgacgtagctgaagcccgtgcccacgggattatc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gtcctttgcgtaggcatctgttgtgttgacatagctgaagcccgtgcccacgggattatc 320

                                                                       
Query: 121 cacaaacaggagactggcccactgcagctgcagccacccagaaggagcaagcagggcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaacaggagactggcccactgcagctgcagccacccagaaggagcaagcagggcaat 380

                                                                       
Query: 181 tggtggttagtcatcagttatcttcctggcaactttgcaaaaccacctttatgataacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtggttagtcatcagttatcttcctggcaactttgcaaaaccacctttatgataacat 440

                                                                       
Query: 241 cagcgtggtgactttatcttattgctcaaagtgatttgggggcagctggggaaatggccc 300
           |||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct: 441 cagcgtggtgactttatcttattgttcaaagtgatttgggggcagctaggaaaatggccc 500

                                                                       
Query: 301 agttaggaaattgcttgccttatgagcatgaggccctgagttccatgacgagaatccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 agttaggaaattgcttgccttatgagcatgaggccctgagttccatgactagaatccatg 560

                                                                       
Query: 361 aaaaaaagttggacaagcctggtggcagggcacgccttgaatcccagcactggggaggca 420
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 taaaaaagttggacaagcctggtggcagggcacgccttaaatcccagcactggggaggca 620

                                                  
Query: 421 gaggcaggtggatctcttgagtttgaggccagcctggtc 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggcaggtggatctcttgagtttgaggccagcctggtc 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)