Query= MSMg01no367_m09.b1 MSMg01no367_m09.b1 CHROMAT_FILE:
MSMg01no367_m09.b1 PHD_FILE: MSMg01no367_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:02 2005
(479 letters)
>mm_chr11_12167133_12168011
Length = 879
Score = 880 bits (455), Expect = 0.0
Identities = 470/475 (98%)
Strand = Plus / Plus
Query: 5 gaattcaaactattccatgaaaacctgggcacttgattggttagtcttttgtctatcttt 64
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaactatcccatgaaaacctggacacttgattggttagtcttttgtctatcttt 264
Query: 65 gtggtgccgaggatttaactagatcattgtacaatctaggaaagggctccaccaaggagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtggtgccgaggatttaactagatcattgtacaatctaggaaagggctccaccaaggagc 324
Query: 125 tacatcttcaaacccttaattaaccctttaaacatgcatcctctaggcaactgtggtggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacatcttcaaacccttaattaaccctttaaacatgcatcctctaggcaactgtggtggt 384
Query: 185 taaatattcaaactagtgataataaagacaattttttgtagtctgactcctgacttaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaatattcaaactagtgataataaagacaattttttgtagtctgactcctgacttaaaa 444
Query: 245 tgactgcatatatacacatacatgtatatatataacaacaagtaatgaaaatgggtccat 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgactgcatatatacacatacacgtatatatataacaacaagtaatgaaaatgggtccat 504
Query: 305 gaactttaaaaagagcaaggagggatatataaaagggtttggggggagggaaggaaaaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaactttaaaaagagcaaggagggatatataaaagggtttggggggagggaaggaaaaac 564
Query: 365 aaattacaatttcaaaaacaacagcaataataaaaatgactttcttaaacaaacaagcaa 424
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 aaattacaatttcaaaaacaacagcaataataaaaatgagtttcttaaacaaacaagcaa 624
Query: 425 acaaaaacatgaagaatgaacagaaacagaccattctggtatggaaccttctgac 479
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaaaacatgacgaatgaacagaaacagaccattctggtatggaaccttctgac 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_m09.g1 MSMg01no367_m09.g1 CHROMAT_FILE:
MSMg01no367_m09.g1 PHD_FILE: MSMg01no367_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:02 2005
(528 letters)
>mm_chr11_12358331_12359255
Length = 925
Score = 944 bits (488), Expect = 0.0
Identities = 517/530 (97%), Gaps = 7/530 (1%)
Strand = Plus / Minus
Query: 1 cttggaggcaggcgtcctgctttgtgtagtatcatctgcctgtggcacaggagacagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cttggaggcaggcgtcctgctttgtgtagtatcatctgcctgtggcacaggagacagctg 666
Query: 61 tcatccagtacaccaaccccacatcccatttgtggtttgataagatagtcttagaactca 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 665 tcatccagtacaccaaccccacatcccaattgtggtttgataagatagtcttagaactca 606
Query: 121 cagggacttcagtgtcatatgattcagtgtgttcccagaatgtgctagatacctcttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cagggacttcagtgtcatatgattcagtgtgttcccagaatgtgctagatacctcttttg 546
Query: 181 --aaaaaaaaaatcctgacatttacctcagctttcacatacctttgtttctgccagacac 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 545 aaaaaaaaaaaatcctgacatttacctccgctttcacatacctttgtttctgccagacac 486
Query: 239 tgtgtgaacagacggaccaactagtgctgaaggttctctgctctgttgaagcttgccaac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgtgtgaacagacggaccaactagtgctgaaggttctctgctctgttgaagcttgccaac 426
Query: 299 atgaggccttcccatgcagtagccccacagaggagcaggacacaggacaggcacctgccc 358
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atgaggccttaccatgcagtagccccacagaggagcaggacacaggacaggcacctgcc- 367
Query: 359 ttttctttgtgactcaagttgtgcatatctctgtccatgtggccttggcacaactcccat 418
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 366 ----ctttgtgactcaagttgtgcatatctctgttcatgtggccttggcacaactcccat 311
Query: 419 cctacaaccatgtaggggaggcttggcacagtgggacacagttcctgacacgatggtcta 478
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 310 cctacgaccatgtaggggaggcttggcacagtgggacacagttcctgacatgatggtcta 251
Query: 479 gtgaggactaggaggacttgccacagtggactgacagggggcaggtggtc 528
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gtgaggactaggaggacttgccacagtggactgacagggggcaggtggtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 925
Length adjustment: 10
Effective length of query: 518
Effective length of database: 915
Effective search space: 473970
Effective search space used: 473970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
