Query= MSMg01no368_c15.b1 MSMg01no368_c15.b1 CHROMAT_FILE:
MSMg01no368_c15.b1 PHD_FILE: MSMg01no368_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:32 2005
(632 letters)
>mm_chr11_40050669_40051700
Length = 1032
Score = 1154 bits (597), Expect = 0.0
Identities = 620/628 (98%)
Strand = Plus / Minus
Query: 5 gaattcagcagtctcacatgtttatctactccatttccagtcttaggatgcttttctctt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattcagcagtctcaaatgtttatctactccatttccagtcttaggatgcttttctctt 773
Query: 65 caaatcaagcctgacttaaaatttacagcaatctggagcatatcaatcagaatagaagag 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 772 caaatcaagcctgacttaaaatttacagcaatctggagcgtatcaatcagaatagaagag 713
Query: 125 ggagagaagacatgtgcaactttgggccagcagaagatcatgtacatgacactaaatata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ggagagaagacatgtgcaactttgggccagcagaagatcatgtacatgacactaaatata 653
Query: 185 tatgtcaaggtatctgaagccaacacaagtgttcctgtataccctcctggcactatgact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tatgtcaaggtatctgaagccaacacaagtgttcctgtataccctcctggcactatgact 593
Query: 245 gctatacataacttttctctccctgaagattcactttaaaatccggagtcttcctcttcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gctatacataacttttctctccctgaagattcactttaaaatccggagtcttcctcttcc 533
Query: 305 tgtcatacatctgattgaaaaactaaattattgcttttggcaggaaccttccaccagtga 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 532 tgtcatacatctgattgaaaaactaaattattgcttttggcaggaacctttcaccagtga 473
Query: 365 gcgctcgctctgttgaaggctgaatactataacacaatgtaccacactgactcttggctg 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 472 gcgctcgctctgttgaaggctgaatactataagacaatgtaccacactgactcttggctg 413
Query: 425 tatctaagcagagactaaattcagtaaattgtcagaacagtgtagacatctgctatctgt 484
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 412 tatctaagcagagactaaatccagtaaattgtcagaacagtgtagacatctgttatctgt 353
Query: 485 ttaaattgtacgaggtgtgtgcttcttgtccctgggccccttagagttctgctgaatgtt 544
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttaaattgtacgaggtgtgtacttcttgtccctgggccccttagagttctgctgaatgtt 293
Query: 545 atctctcanataaaccacatgttcttgaatctttgaccttgggtttttgatagaggagtc 604
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atctctcaaataaaccacatgttcttgaatctttgaccttgggtttttgatagaggagtc 233
Query: 605 acataagtagtgatcatataacagactt 632
||||||||||||||||||||||||||||
Sbjct: 232 acataagtagtgatcatataacagactt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_c15.g1 MSMg01no368_c15.g1 CHROMAT_FILE:
MSMg01no368_c15.g1 PHD_FILE: MSMg01no368_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:32 2005
(517 letters)
>mm_chr11_39847243_39848159
Length = 917
Score = 857 bits (443), Expect = 0.0
Identities = 486/517 (94%), Gaps = 27/517 (5%)
Strand = Plus / Plus
Query: 1 catcattattttgtgttgagtgaaaggttggtaaatttttatttctttaatagaaaatta 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 catcattattttgtgttgagtgaaaggttggtaaattttcatttctttaatagaaaatta 260
Query: 61 tttttaaaaatgaagggaaaaaaagctaacgtatcagaaaacttaagttctgtgcttggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttaaaaatgaagggaaaaaaagctaacgtatcagaaaacttaagttctgtgcttggt 320
Query: 121 tatttcaattcccagatagctcattgataagtgaggatttgttgtcatgattatatggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttcaattcccagatagctcattgataagtgaggatttgttgtcatgattatatggac 380
Query: 181 cattgtcctcatgcttcttgtgttaggaacctctaaacatatgtagtcccacacatatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgtcctcatgcttcttgtgttaggaacctctaaacatatgtagtcccacacatatac 440
Query: 241 atttggaagctaacctggaaagcataattccagctcagaaacaaaagacatccttgaata 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttggaaactaacctggaaagcataattccagctcagaaacaaaagacatccttgaata 500
Query: 301 gatgcactactctaatgtgtgaaactttggctttttgttcagaaaactaaccagacatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgcactactctaatgtgtgaaactttggctttttgttcagaaaactaaccagacatct 560
Query: 361 tcatacgactgtgcttaacataacacagctgatcttgctcatgccagcttgctctacatt 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 tcatatgactgtgcttaacataacacagctgatcttgctcatgccagcttgctgtacatt 620
Query: 421 tgtataacaggaattgaatcatcctctccaaacaggaattgaatcatcctctccaatgat 480
||||||||||||||||||||||||||||||| ||||
Sbjct: 621 tgtataacaggaattgaatcatcctctccaa-------------------------tgat 655
Query: 481 gaaattagcaatagagtgtgtagaatgttacagagaa 517
||||||||||| ||||||||||||||||||||||||
Sbjct: 656 gaaattagcaa--gagtgtgtagaatgttacagagaa 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
