Query= MSMg01no368_n20.b1 MSMg01no368_n20.b1 CHROMAT_FILE:
MSMg01no368_n20.b1 PHD_FILE: MSMg01no368_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:26 2005
(527 letters)
>mm_chr11_45657778_45658704
Length = 927
Score = 944 bits (488), Expect = 0.0
Identities = 510/526 (96%), Gaps = 15/526 (2%)
Strand = Plus / Plus
Query: 1 agaccaggtttgacacaggctcatgcagataccacagctgatacttctgatcttggcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccaggtttgacacaggctcatgcagataccacagctgatacttctgatcttggcaca 260
Query: 61 cagccctggatcatctatctctcttcagcttttgtttctacatctgtcacccatattaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccctggatcatctatctctcttcagcttttgtttctacatctgtcacccatattaga 320
Query: 121 caatgtggaggcccagcagtaccccaaagttagctaactaattaagctaaagacatttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgtggaggcccagcagtaccccaaagttagctaactaattaagctaaagacatttga 380
Query: 181 gattcggtgacatttgagtacagagagaagccttctggaagtcccccttacctgacttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcggtgacatttgagtacagagagaagccttctggaagtcccccttacctgacttca 440
Query: 241 tttcagaagactctgaggaggacgaccataaattcccttttcagaaaggcgtctgcccca 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tttcagaagactctgaggaggacgaccataaattcccttttcagaaag----------ca 490
Query: 301 aaggacagagaccaagagtacattgaccatgaaggtccttccctggctggggttttatga 360
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 491 -----cagagaccaagagtacattgaccatgaaggtccttccctagctggggttttatga 545
Query: 361 ccctggagacaacactaagatcagtcacaactgtatagaaaagtatcgtcatagacgtcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ccctggagacaacactaagatcagtcacaactgtatagaaaagtatcgtcatagacgtcc 605
Query: 421 cttccttagctcttctaaaagtccacttatcctgcccacgggtggcttttctccctgctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cttccttagctcttctaaaagtccacttatcctgcccacgggtggcttttctccctgctc 665
Query: 481 tcttcccctactgagttagaaatatgagcccagatttctaactgcc 526
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcttcccctactgagttagaaatatgagcccagatttctaactgcc 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_n20.g1 MSMg01no368_n20.g1 CHROMAT_FILE:
MSMg01no368_n20.g1 PHD_FILE: MSMg01no368_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:26 2005
(539 letters)
>mm_chr11_45839413_45840351
Length = 939
Score = 1000 bits (517), Expect = 0.0
Identities = 533/539 (98%)
Strand = Plus / Minus
Query: 1 tctgaaaaccatacttcaggaggttggctcagatgagtgtctgcttctaatcacctacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tctgaaaaccatacttcaggaggttggctcagatgagtgtctgcttctaatcacctacct 680
Query: 61 ccctgcaccccgaaagcagagatttccagcacgacacagcatcaacttccatcttgagtc 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccctgcacctcgaaagcagagatttccagcacgacacagcatcaacttccatcttgagtc 620
Query: 121 aatggtcccaggtctacatagggctgacactattcccaaagtcatatgttaaattcaatc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatggtccccggtctacatagggctgacactattcccaaagtcatatgttaaattcaatc 560
Query: 181 aatagccaatgttacccacttggcaaacaaacatggattcttggacaaaagtcagcagtg 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aatagccgatgttacccacttggcaaacaaacatggattcttggacaaaagtcagcagtg 500
Query: 241 ggctctagaggctatttggaggaagggacaagctagagggcttgactgcatctcaaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggctctagaggctatttggaggaagggacaagctagagggcttgactgcatctcaaatta 440
Query: 301 actatgctaatctgtcatagcttccacagagaatagcaggctgcattcaggggcctgagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 actatgctaatctgtcatagcttccacagagaatagcaggctgcattcaggggtctgagc 380
Query: 361 aacagctgtgctttccaaagcaagacactgttcagaaagatgatccgaatgtgggctgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aacagctgtgctttccaaagcaagacactgttcagaaagatgatccgaatgtgggctgtg 320
Query: 421 tgtttcagcagggcttagtgggactttccaacttaaatggccctttgtgcttttannagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 319 tgtttcagcagggcttagtgggactttccaacttaaatggccctttgtgcttttaaaagc 260
Query: 481 cgggacgctgacctcacgagtggctaacgcatgatgtcttggaggtcttgatttacatt 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cgggacgctgacctcacgagtggctaacgcatgatgtcttggaggtcttgatttacatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
