BAC Information

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BAC

Clone NameMSMg01-368P03
Chromosome11 (Build37)
Map Location 22,040,743 - 22,235,031
singlet/doubletdoublet
Overlap geneEhbp1, LOC100042146
Upstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1
Downstream geneTmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368P03.T7 (MSMg01no368_p03.b1)MSMg01-368P03.TJ (MSMg01no368_p03.g1)
ACCAG476051AG476052
length753737
length of high quality
(start - end)
245 (71 - 315)338 (69 - 406)
definitionCHROMAT_FILE: MSMg01no368_p03.b1 PHD_FILE: MSMg01no368_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:32 2005CHROMAT_FILE: MSMg01no368_p03.g1 PHD_FILE: MSMg01no368_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,234,788 - 22,235,031)(22,040,743 - 22,041,080)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCAGAGAGGAGCGCGGAAT
TCACATTTTTGCATTAAACATTGGTTGTTACCTTCACTGATTTACTCTGT
AACTGAGGAGTAGCCCATGTCTCTGACATGCCAACCATGACCCCTTAAGT
CCTTGTGACTAGCAGCCTATAGTCCTCTAGATTTGCTCAGTTCTTAACAT
GTGGGTGAAGGCCTAACATAGAACCCAGATGTTTCAGAAGAATGAAACCT
ATATCCAGATGAAATGTGGGGTAGAGGCTACAATAAAAATAATATCCAAT
CCTGTCTTTTTCCATCTTTTTTTAGTGCACAGTGTTTTGTTTCCACTTTT
GGATTGTAACTTGAGGCAGATATTAGAGAATAATGCAAACAATAGTAGCA
CTTTAGAGTCCCACACCTCCCTTCATATACTTCAGTGTATTTGAGTTCTA
AAANAAGTCATTTATATTCACATAACTTCTTGAGCTCATTCTTTGTTTTT
AAAAAGTGATGACAATCTCATTATCAGTAAAAATAGTTGAGATACCTCCC
ACTTAAGTACAAATTATGTTGATATATTATCTATAAAATTGATTCTCAGG
TTGAATTCCCATCCTTACCTTATCTTCATGTCATCTTTATATATGAAAAC
CCTACCTTTTTACTTTTCCTGCATTTGCTCATCTATCAATATCCTTTTGG
GTTCTTCAAATCCAATTTTTTATTCTCCTATTATGGTTTTTTATTTCCCT
GTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTATTGCTAACACCAGGTGACTGAGCAATTCA
GAGCACCTTTAAAAGGCTGGCGTGGTCAAAAGGCAACACCTAATGTTCTG
ACTTTAGTTTTCACAAAGGCAGTTAAAATGTTTAAGTAAACACTGCTGTC
TCCTTAGTTTGTTCACAGGAGACAGGAGGGTGTGTGTGCGTGTGTTGTGT
AACAGTCATGCATCTGGGAATGACTGAATACTTGCACTTAAAGTTTGCAT
TAAACTCAAGTACTCTAGGTGTGTGGCTATTACTCAGCACCTACACCACC
CATGAGAAACTTCATTTTGATCACACATTAGCTGTTCAAAGAAAACAAGT
AGAAGAACCCCACCCAATCTTTGACCTAGGTTTGAAATAAGATGATTTTT
AATGTTGTAACTCTAAGTACTTAAGGAAGACACCGCTTTTCTCAAAATGT
AGCCATAGGATCATAAAGCACAGGTAAGATTCTCCTCCTCAGCCGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCTATTTTCTTTTCATCTTT
TATATCCTTTCTTTTTCCTTACTTTTTTTAATTTTCTTTTGATTTCTTTT
CTCAATTAGATAATCTCTCTCTTTTTATAATATTATTATCACTTTTTTTA
TCAATTTCTTTTCAATCATTAGTTACTGTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_p03.b1 MSMg01no368_p03.b1 CHROMAT_FILE:
MSMg01no368_p03.b1 PHD_FILE: MSMg01no368_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:32 2005
         (245 letters)



>mm_chr11_22234588_22235232
          Length = 645

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggttgttaccttcactgatttactctgtaactgaggagtagcccatgtctctgacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttggttgttaccttcactgatttactctgtaactgaggagtagcccatgtctctgacatg 385

                                                                       
Query: 61  ccaaccatgaccccttaagtccttgtgactagcagcctatagtcctctagatttgctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaaccatgaccccttaagtccttgtgactagcagcctatagtcctctagatttgctcag 325

                                                                       
Query: 121 ttcttaacatgtgggtgaaggcctaacatagaacccagatgtttcagaagaatgaaacct 180
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 324 ttcttaacatgtgtgtgaaggcctaacatagaactcagatgtttcagaagaatgaaacca 265

                                                                       
Query: 181 atatccagatgaaatgtggggtagaggctacaataaaaataatatccaatcctgtctttt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatccagatgaaatgtggggtagaggctacaataaaaataatatccaatcctgtctttt 205

               
Query: 241 tcca 244
           ||||
Sbjct: 204 tcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no368_p03.g1 MSMg01no368_p03.g1 CHROMAT_FILE:
MSMg01no368_p03.g1 PHD_FILE: MSMg01no368_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:32 2005
         (338 letters)



>mm_chr11_22040543_22041280
          Length = 738

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctattgctaacaccaggtgactgagcaattcagagcacctttaaaaggctggcgtggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattgctaacaccaggtgactgagcaattcagagcacctttaaaaggctggcgtggtca 260

                                                                       
Query: 61  aaaggcaacacctaatgttctgactttagttttcacaaaggcagttaaaatgtttaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggcaacacctaatgttctgactttagttttcacaaaggcagttaaaatgtttaagta 320

                                                                       
Query: 121 aacactgctgtctccttagtttgttcacaggagacaggagggtgtgtgtgcgtgtgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacactgctgtctccttagtttgttcacaggagacaggagggtgtgtgtgcgtgtgttgt 380

                                                                       
Query: 181 gtaacagtcatgcatctgggaatgactgaatacttgcacttaaagtttgcattaaactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaacagtcatgcatctgggaatgactgaatacttgcacttaaagtttgcattaaactca 440

                                                                       
Query: 241 agtactctaggtgtgtggctattactcagcacctacaccacccatgagaaacttcatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtactctaggtgtgtggctattactcagcacctacaccacccatgagaaacttcatttt 500

                                                 
Query: 301 gatcacacattagctgttcaaagaaaacaagtagaaga 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatcacacattagctgttcaaagaaaacaagtagaaga 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)