BAC Information

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BAC

Clone NameMSMg01-368P14
Chromosome11 (Build37)
Map Location 24,658,935 - 24,659,507
singlet/doubletsinglet
Overlap genenone
Upstream geneRel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282, 5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368P14.T7 (MSMg01no368_p14.b1)MSMg01-368P14.TJ (MSMg01no368_p14.g1)
ACCAG476073AG476074
length739719
length of high quality
(start - end)
355 (70 - 424)573 (69 - 641)
definitionCHROMAT_FILE: MSMg01no368_p14.b1 PHD_FILE: MSMg01no368_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:34 2005CHROMAT_FILE: MSMg01no368_p14.g1 PHD_FILE: MSMg01no368_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTCCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTAGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTG
ATCCATTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATAACAACTCAGTTGTGTCAGCACCAATTGCTGACA
ATGCTGTCTTTCTTCCACTGTATGGTTTTAGTTCCCTTGTCGAATATCTT
GTGACTCTATGTGTGTGGTTTTCTTTTCTGGGTCTTTCATTTTATTCCAT
TGGTCTTATTGACCTGTTTCTATCCCGATCTATGGCGTTTTTTACACTTA
CTTGCTCTGTATGATCACCTTTTTTCGTCCTGCTTGTCTGTATTCCGCCC
TTATTTCTCCTCTTAATTCTTTTTCATATTAGTATTTCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACAGAGTCTCTCGGACCACCCCAGGGAAGCTT
ATACAATCGAACCCTCCCGAAACTGAGCACAGCTGCTTTCTCCCTAAAAG
GAATTCCCAAAGAGCTTTCACTGGATGCAGTGACGCCCCTCTCCTAGCTT
GACAAAGAATTTTCCGGTTTTAGGGCTGAAACTCTTGCATCCTGGGAAAC
GCTTCAGTCTTTGAGAACCTGGAACGGTTCAGTTACCTTCCTTGAAGGAA
TGGGCCCGAGGTTAACTCTTGTACTCTGAGGAAAATGAGGAAAGCCCAAG
GCTCACAGTCCCACTCACAGCACCCTGGATATTAGACACTTAGCCCTTTT
ATCTCCGCCCAACCCCATATTATAGATTGCACTCAGAATCCCAGTTTCAG
ACTTTTACTAGCTAGATGACTTCAGATAAGTTCTTCCAGCTAGCTTCACG
TCAGTTTTCTCACCTGCGATCCTACGTAATTCTACTTTCTCACTCCTGTG
TGAACTGAATGAGATTAGTGCGTATAAAGCATTCGGCATATAGGCTGCCA
CAGTGTAGACAGTAAGAGACGGTTATTACTATAATTAGTACTTGGCTCCC
TAAGCCCTTTATTAATGAGTGGTACCAGCTAAGAATCTTGATCTTATAAG
CCAGCATCTCAGCTTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_p14.g1 MSMg01no368_p14.g1 CHROMAT_FILE:
MSMg01no368_p14.g1 PHD_FILE: MSMg01no368_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:34 2005
         (573 letters)



>mm_chr11_24658735_24659707
          Length = 973

 Score =  992 bits (513), Expect = 0.0
 Identities = 558/573 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagtctctcggaccaccccagggaagcttatacaatcgaaccctcccgaaactgagc 60
           |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 acagaggctctgggaccaccccagggaagcttatacaatcgaaccttcccgaaactgagc 260

                                                                       
Query: 61  acagctgctttctccctaaaaggaattcccaaagagctttcactggatgcagtgacgccc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 acagctgctttctccctaaaaggaattcccaacgagctttcactggatgcagtgacgccc 320

                                                                       
Query: 121 ctctcctagcttgacaaagaattttccggttttagggctgaaactcttgcatcctgggaa 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ctctcctagcttgacaaagaattttccggttttagtgctgaaactcttgcatcctgggaa 380

                                                                       
Query: 181 acgcttcagtctttgagaacctggaacggttcagttaccttccttgaaggaatgggcccg 240
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 actcttcagtctttgagaacctgggacggttcagttaccttccttgaaggaatgggcccg 440

                                                                       
Query: 241 aggttaactcttgtactctgaggaaaatgaggaaagcccaaggctcacagtcccactcac 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggaactcttgtactctgaggaaaatgaggaaagcccaaggctcacagtcccactcac 500

                                                                       
Query: 301 agcaccctggatattagacacttagcccttttatctccgcccaaccccatattatagatt 360
           ||||||||||||||||||||||||||||||||||||| |   |||||| |||||||||||
Sbjct: 501 agcaccctggatattagacacttagcccttttatctctgggaaaccccgtattatagatt 560

                                                                       
Query: 361 gcactcagaatcccagtttcagacttttactagctagatgacttcagataagttcttcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcactcagaatcccagtttcagacttttactagctagatgacttcagataagttcttcca 620

                                                                       
Query: 421 gctagcttcacgtcagttttctcacctgcgatcctacgtaattctactttctcactcctg 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gctagcttcacgtcagttttctcacctgcgatcctatgtaattctactttctcactcctg 680

                                                                       
Query: 481 tgtgaactgaatgagattagtgcgtataaagcattcggcatataggctgccacagtgtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgaactgaatgagattagtgcgtataaagcattcggcatataggctgccacagtgtag 740

                                            
Query: 541 acagtaagagacggttattactataattagtac 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 acagtaagagacggttattactataattagtac 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)