BAC Information

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BAC

Clone NameMSMg01-369B04
Chromosome11 (Build37)
Map Location 48,896,658 - 48,897,063
singlet/doubletsinglet
Overlap geneOlfr56, LOC100039796
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik
Downstream geneIfi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369B04.T7 (MSMg01no369_b04.b1)MSMg01-369B04.TJ (MSMg01no369_b04.g1)
ACCAG476149AG476150
length793805
length of high quality
(start - end)
188 (62 - 249)406 (75 - 480)
definitionCHROMAT_FILE: MSMg01no369_b04.b1 PHD_FILE: MSMg01no369_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:42 2005CHROMAT_FILE: MSMg01no369_b04.g1 PHD_FILE: MSMg01no369_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTATCTCTGAGCCCCATTTTTTAATAGGGTTATTTGATTTTCTGGAGTC
CACCTTCTTGAGTTCTTTATTCATTCTGTTTCTATTTTGTGGAATGTTTT
ATCCCACATATAGTCAACAAACCCAGATGCCATGAAGTGCTTTCTGACAG
GAGCCTAATATGGCTGTTTTCTGAGAGGTTCTGCCAGAGCCTGACAAATA
CATATGCAGGTGCTTGCAGCCAATCATTGTACTGATCCTGAAGTCCCTTA
TGTATCACATGATCAGGTCCTGAAAATACTGTCCGGCTCTGATCCGTTAC
TTTTTTCTCTCTTCCGTTCTACTCTAGTTGAGGCTTTTTTGCTTAGCGTA
GTTGTTTGACTCTCTCAATGTTCCCACTTTTTATACTACTAATCGATTCT
AACAATCCTTAACTAATTGTTTCTCTCCTTTCCGCCCCTTATTTTTGTTT
CATCTTTCTCTCATTTCGAATTTCCATCCCCCTCCTCCTATCATTCCCTT
TTTGCTTTCTCATACCCCTCTCCCTTCTTTTTACTCGTTTACCCTTTTTT
TTTTTTTTCCCTTCCTTCTTTCTTTTTTTTCCCTATTTTTCCCCTTTTTC
CCTTTTTTATTATTTTTTCCTCTCCTTTATTTTTTATTCTTTTTTCTTTT
TTATTTTTATCTTTTCTTCTTTTCTCCTTTCTCTTCCTCTCTCTTCTTTT
ATCCACCTTCTTTTTTCTTTTTTACTTTTTATCTTTTTTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCATGTCCTTGTTCTCAAGTGTC
TTCACTTATAAAAGTTCCTATAACTCTTCCTAGAAAAATCCCTTGTGGGA
AGAACATTTTCTACTCTGCCCCACCCATAGTTCACAATAAGTTCACAGCT
TCCTTACATAGGTTCCCACACAATATTCTTCTTGTAGGTTTAGCAAATAA
GTGTGTTGCCTAGTTACGTAGCAACACTGTGGGGCTGTGGGGGTGGCTCC
ATGGTAAAGAACTTATTTTGAAAGATAGAAACAGAAATGGCTGGAAACCT
CTTGAGTCTGCACCTCACTCTCTTGCCCCATCTTACATCCATACATAGTC
ACATGGAACTCAACCATTGCCTGCCTCATTTGACTCTGGTTTATGTCTAT
TCTTGAATGACCATGCATAACACTGAGCTCAGATGAACGAACTATGGGTT
ACGTCTGCATTTTCTGGACCTCCTGACTTCTGATTATGTCCCCTAGGACA
ATGGTGTATTATAGACTTTCCAACTTCTTGCTTTTTGTTTATTGTTAACT
AAGTTATTTATTGAATTTAACTATGTTCTTTCCTTCCTGTATTTATCATC
ATTCTCATGAATCTCAAATTGTCGGCAAGGATTATTTTATAGCCCCTTGT
TCTCGGTTCACTTACGGGCTCTCAATCTTAATCTTTTCATTTTTCTAGTA
TTCTTTTATTATTTTCGCCCCCCTTGTCTTTTCTCTATCTGCTTTGCTCT
TTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_b04.g1 MSMg01no369_b04.g1 CHROMAT_FILE:
MSMg01no369_b04.g1 PHD_FILE: MSMg01no369_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:42 2005
         (406 letters)



>mm_chr11_48896458_48897263
          Length = 806

 Score =  762 bits (394), Expect = 0.0
 Identities = 403/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcatgtccttgttctcaagtgtcttcacttataaaagttcctataactcttcctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcttcatgtccttgttctcaagtgtcttcacttataaaagttcctataactcttcctaga 547

                                                                       
Query: 61  aaaatcccttgtgggaagaacattttctactctgccccacccatagttcacaataagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaaatcccttgtgggaagaacattttctactctgccccacccatagttcacaataagttc 487

                                                                       
Query: 121 acagcttccttacataggttcccacacaatattcttcttgtaggtttagcaaataagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acagcttccttacataggttcccacacaatattcttcttgtaggtttagcaaataagtgt 427

                                                                       
Query: 181 gttgcctagttacgtagcaacactgtggggctgtgggggtggctccatggtaaagaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gttgcctagttacgtagcaacactgtggggctgtgggggtggctccatggtaaagaactt 367

                                                                       
Query: 241 attttgaaagatagaaacagaaatggctggaaacctcttgagtctgcacctcactctctt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attttgaaagacagaaacagaaatggctggaaacctcttgagtctgcacctcactctctt 307

                                                                       
Query: 301 gccccatcttacatccatacatagtcacatggaactcaaccattgcctgcctcatttgac 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 306 gccccatcttacatccatacatagtcacatggaactcaaccactgcctgcctcatttgac 247

                                                         
Query: 361 tctggtttatgtctattcttgaatgaccatgcataacactgagctc 406
           ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 246 tctggtttatgtctattcttgaatgaccatgcagaacactgagctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)