BAC Information

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BAC

Clone NameMSMg01-369F09
Chromosome11 (Build37)
Map Location 8,153,577 - 8,154,051
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369F09.T7 (MSMg01no369_f09.b1)MSMg01-369F09.TJ (MSMg01no369_f09.g1)
ACCAG476349AG476350
length763776
length of high quality
(start - end)
326 (28 - 353)471 (65 - 535)
definitionCHROMAT_FILE: MSMg01no369_f09.b1 PHD_FILE: MSMg01no369_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:02 2005CHROMAT_FILE: MSMg01no369_f09.g1 PHD_FILE: MSMg01no369_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTTAGCTCT
GTATCCCATTTTTAAATAGGGTTATTTGGTTTTCTGAAGCCCAACTTCTT
GAGTTCTTTGTATATATTGGATATTAGCTCTCAACCGGATATAGGGTTGA
TAAAGATCTTTCCCCAATCTGTTGATTGCCATTTTGTCCTATTGACAGTG
TCCTTTGTCTTACAGAAGCTTTGTAATTTTATGAGGTCCCATTTGTCAAT
TCTTAATCTTAGAGCATAAGCCATTGGTGCTCTGTTCAGGAAAATTTCCC
CTGTGCCCAAATGTTTGAGTTCTTCCCTACTTTCTCCTCTATAAGTTTCA
GTGGATATTGGCTTTATGCGGAGTTCCTTTATCCACTTGGACTTTACCCT
TGCACATGGGGATAAGAATGGGTCGACTTGCATTTTTCTGCATGCCGAAC
CTCCTTTGTTGAACCCCACCATTTGTTGAAAACGGTTCCCTTTCCCCCCT
GGAAGGGCTTACCCCCCCCGGCCCATATTCAGGGGACCTCAGGCGGGTGT
GCCTCCTCTCTTGGGCTTCTTCCTCTTCCTTCTCCTCCTTCTCCCTCCGG
GTCCTTCGCCCCCCCCCCCCCCCCCCTTTTTCTTCCTCCCTTTCTTCTCC
CCCCTTCTCCCTCCCCCCTTCCTTTTTTCCCCCCTCTCCTCTGCTCTTCC
CCGTTTTTCACTTTCCTTTCCCTTTCCCCCTCCTCCCTCCTCCTTCCCCT
CCCCTTCTCTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCAGGACACTGTTCTTGCACCTCAGGTCTTTGGTC
CAGTAAAGTGTTTCTGACGTGGATATTCATATATGTGCTAAAATGTAAAG
ACTCAACATTTCAAAGAACTGTTAAATCAATTCCAGAAAGCTTGGGCACT
TGTACTTAAAATGAGGTCAATATTATTTCAAGCTGTTTATGGCAAAGTCA
TCGTTCATCACACTTCAGTGTGCCGTGTTCCCATTTACTTAAGCTAAAGT
TGGCCCCTCTCTTGCCACATAAGCAAATCACCAAATTTTAAAATATGTTT
TGTGTAAAATATGCTGACAACCACAATATAACTTGATGCAATAATTAAAG
GGAACAAAACAAAAATAACATCTCAAAATTATTTATAGAAAATGTAAGTA
CATAACAGATCCTTTTGATAAGTAGCCAGTAACTGGACTTAAAAAAAAAA
CAACACTTTCATGAGTATTTTCCTAGAATAATTTAATAATCATAGATTTA
TACTTTAGTTCACTGACTAAATTAACAAAACCTTCCAAAAACGAATCACC
CACATCTGCAGGGGGGGGAATATAAGCTGGACTTTTTTATTTTCTCCAAC
CATTGTTATAAAAATTGGCACATTACCCCCTTTGAAAACATTTTTGGTTG
GAAAGCCACAAAAACACCCCTCCCTTTTACCCGCGTTATAATATCCTGTC
TCGAAATTCTCGTGCCCCTAATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_f09.g1 MSMg01no369_f09.g1 CHROMAT_FILE:
MSMg01no369_f09.g1 PHD_FILE: MSMg01no369_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:02 2005
         (471 letters)



>mm_chr11_8153377_8154251
          Length = 875

 Score =  845 bits (437), Expect = 0.0
 Identities = 464/475 (97%), Gaps = 4/475 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggacactgttcttgcacctcaggtctttggtccagtaaagtgtttctgacgtggat 60
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaggacactgttcttgtacctccggtctttggtccagtaaagtgtttctgacgtggat 260

                                                                       
Query: 61  attcatatatgtgctaaaatgtaaagactcaacatttcaaagaactgttaaatcaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcatatatgtgctaaaatgtaaagactcaacatttcaaagaactgttaaatcaattcc 320

                                                                       
Query: 121 agaaagcttgggcacttgtacttaaaatgaggtcaatattatttcaagctgtttatggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaagcttgggcacttgtacttaaaatgaggtcaatattatttcaagctgtttatggca 380

                                                                       
Query: 181 aagtcatcgttcatcacacttcagtgtgccgtgttcccatttacttaagctaaagttggc 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtcatcgttcatcacatttcagtgtgccgtgttcccatttacttaagctaaagttggc 440

                                                                       
Query: 241 ccctctcttgccacataagcaaatcaccaaattttaaaatatgttttgtgtaaaatatgc 300
           ||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ccctcccaggccacataagcaaatcaccaaaatttaaaatatgttttgtgtaaaatatgc 500

                                                                       
Query: 301 tgacaaccacaatataacttgatgcaataattaaagggaacaaaacaaaaataacatctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacaaccacaatataacttgatgcaataattaaagggaacaaaacaaaaataacatctc 560

                                                                       
Query: 361 aaaattatttatagaaaatgtaagtacataacagatccttttgataagtagccagtaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaattatttatagaaaatgtaagtacataacagatccttttgataagtagccagtaact 620

                                                                  
Query: 421 ggacttaaaaaaaaaa----caacactttcatgagtattttcctagaataattta 471
           ||||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 621 ggacttaaaaaaaaaaaaaacaacactttcatgagtattttcctagaataattta 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 875
Length adjustment: 10
Effective length of query: 461
Effective length of database: 865
Effective search space:   398765
Effective search space used:   398765
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)