Query= MSMg01no369_f19.b1 MSMg01no369_f19.b1 CHROMAT_FILE:
MSMg01no369_f19.b1 PHD_FILE: MSMg01no369_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:04 2005
(158 letters)
>mm_chr11_100399111_100399668
Length = 558
Score = 252 bits (130), Expect = 1e-71
Identities = 151/158 (95%)
Strand = Plus / Minus
Query: 1 gcttggctccgaaacttctaagagtaggtgctgagtagcagcatgggcctgaacacatgg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 358 gcttggctccgaaacttctaagagtaggtgctgagtagcaacatgggcctggacacatgg 299
Query: 61 cttctgcctacccttgatagactttctaaacagggagcatggggaaaggatgcaaaaagc 120
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 298 cttctgcctacccttgagagactttctaaacagggagcatggggaaaagatgcaaaaagc 239
Query: 121 aaaactgataatgtttttctgatattatgtttagtgtg 158
|||||||||||||||||||||| || | ||||||||||
Sbjct: 238 aaaactgataatgtttttctgagataaggtttagtgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space: 82500
Effective search space used: 82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no369_f19.g1 MSMg01no369_f19.g1 CHROMAT_FILE:
MSMg01no369_f19.g1 PHD_FILE: MSMg01no369_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:04 2005
(480 letters)
>mm_chr11_100204854_100205734
Length = 881
Score = 793 bits (410), Expect = 0.0
Identities = 454/474 (95%), Gaps = 12/474 (2%)
Strand = Plus / Plus
Query: 10 tgcttaacccatattgtcaaaatacaattggaaaacact--agctctccccagttccacc 67
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 217 tgcttaacccatattgtcaaaatacaattggataacactgtagctctccccagttccacc 276
Query: 68 ccgctccccccacccccgccaccggctttgtgttcccattctttaaaaatgcaatgcagc 127
|| | ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 277 ccac---ccccacccccg------gcttcgtgttcccattctttaaaaatgcaatgcagc 327
Query: 128 ttcccctcccggacacagttcagatcctcgactggccacctccctgagtgctcagaaaat 187
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 328 ttcccctcccggacacagttcagatcctcgactggccacctccctgaatgctcaggaaat 387
Query: 188 aaagctctcatat-aaagcttccatatctgaaatgagttttcttggcttctaccctgaac 246
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaagctctcatgttaaagcttccatatctgaaatgagttttcttggcttctaccctgaac 447
Query: 247 ccaacaacaggactaggggtgtatctccatggtgaggcactttgcatacaaagtgtgaag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccaacaacaggactaggggtgtatctccatggtgaggcactttgcatacaaagtgtgaag 507
Query: 307 ccctggctccagtccctagcaccaccgctgcttcttggccttgtttgggtcttcctatct 366
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 508 ccctggctccagtccctagcaccaccgctgcttcttggccgtgtttgggtcttcctatct 567
Query: 367 gcaggccaaaagaaaaagtcagtgactatcaaaggttactgaagtggaagttcttggttt 426
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 568 gcaggccaaaagaaaaagtcagtgactatcagaggttactgaagtggaagttcttggttt 627
Query: 427 ctttggaaactcggttgtgccatgggatgtttttctggaagctgtcttgtgaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctttggaaactcggttgtgccatgggatgtttttctggaagctgtcttgtgaga 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 881
Length adjustment: 10
Effective length of query: 470
Effective length of database: 871
Effective search space: 409370
Effective search space used: 409370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
