BAC Information

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BAC

Clone NameMSMg01-369J06
Chromosome11 (Build37)
Map Location 80,088,187 - 80,251,789
singlet/doubletdoublet
Overlap geneRhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11
Upstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1
Downstream geneCdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369J06.T7 (MSMg01no369_j06.b1)MSMg01-369J06.TJ (MSMg01no369_j06.g1)
ACCAG476530AG476531
length795775
length of high quality
(start - end)		229 (62 - 290)244 (56 - 299)
definitionCHROMAT_FILE: MSMg01no369_j06.b1 PHD_FILE: MSMg01no369_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:21 2005CHROMAT_FILE: MSMg01no369_j06.g1 PHD_FILE: MSMg01no369_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,088,187 - 80,088,415)(80,251,546 - 80,251,789)
sequence
CGGTCGCTATACGACTCACTATATTCCGAGAGACCGCGGAATTCATAGGT
TGTTCCCTGCCGTATCCCGTGTGCCTCACAACCACCATCTTCCTTCTACC
ATCCGTCCTTTCTTCTACTTGTCCTACCCTGCTTCATAAGCCTGACTCGG
TTGCTCTTTGCTTGCTTCTCTGCGCCTACTGTTTCTGGCCTGTGGTATAC
CTACCTATTTCAGAGCTGCTTTCTGCTTGTAACGCATTTCACGATAGCTA
CTTTGTGCTTGTCACTCATATCCTGGTTTTATGTATCAGCTCCTTGTGCG
TATACTTCCCATATTTTTCTACTCTGAGGAAGTCTCCTGGAATCTCTTTC
CTTGTGTCTATCTATCATTTTGCTTTCTCTCTTCATTTTTTTTTTTAGCT
GTATTCCCCACTGTTTGCCTTTTTTCCTCTTGCTTGCACTATCTAGTTTA
TATTCTGCCTCCTCACTCTTTCTTGTATTATACCCTATTTTTTTCTCTTT
TTTTTTTCCCCTTTCTTATTTTCCTTTTTTCCCTTTTTTTTCTTTTTTTT
TTTTCTTTTTCCCTTTCTTCTTCTTTTTTTTCCTTTTCTCTTTTTTTTTT
TTCCATCCCCTTCTCTTTTTTTTTTCCTTTTTTTCTCCCCTTTCTCCCCT
TTTTTTTTTTTTTTTTTACTCCTTTTTTTATTATCCGCTCTTTCCTTTTT
TTTTTTTTATTTTTTTTTTTATTTATTTTTTCCTACTTTCTCTTCTTATC
TCCCCTTCCTTCATTTTTTTCTTCTTCACTCCTTCCCATATTACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAGAAAGGCCGTACATACTTCAGGAGTCCTCCAAGCTCTGTGTGG
ATGGCAATTCAGAAAATAAAATGTACATTTTAATATTAGAAACAAAACCT
TTATTTAAAGAGCCGGGCCTCGGGGAGCTGAATGTGCTTGCTGCTATGTC
TGATGGCCCACCTTAGACCCCAGGACCAAATTCCTGCCAACTGTGTTTTA
AGCTCCACACAAGCATATGGCATGCATTTACATACAATGCATACATACAA
ATATTTTTTTTTAAATACATTAATAGATGTTTTTTAAAACTCCTTTGTCG
GGCAGTGGAGTTTTAAAAAATACCTTTAAAAAACCACACGAGTTTAATCC
CAGCACTTGGGAGGCAGAGACAGGCGTATTTCTGAGTTCTAGGTCAGCCT
GGTCTATTGAGTGAGTTCCAGGACAGCCAGTGTTATTTTGACAAACCTTG
TCTCTTTCTTTCCTCGCTCACCTTATTGACCCTTTTTCTCCCCATTTACC
CTTCCTCCTCATCTTGTTCTTTATTATTGAGCCCCCTTTATAATTATTCA
TACCTGGCTTTTTTTCTCCCTGCCATCACCCACTCACTCTTTAATTCCTT
TCTTTTCTCTCCTTGGTTTTTCCCTTTTTCTCCCTTGTTTCCCTCTCCCC
CCCTATCTCATTCTCTCCCTCTTTCCTTTTTTTTTTCCCCCCCCTTCTTT
TTTCCCCCCTCCCCTTCCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_j06.b1 MSMg01no369_j06.b1 CHROMAT_FILE:
MSMg01no369_j06.b1 PHD_FILE: MSMg01no369_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:21 2005
         (229 letters)



>mm_chr11_80087987_80088615
          Length = 629

 Score =  389 bits (201), Expect = e-113
 Identities = 222/229 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatcccgtgtgcctcacaaccaccatcttccttctaccatccgtcctttcttctacttg 60
           |||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct: 201 gtatcccgtgtgcctcacaaccaccatctttctactaccatccgtccattcttctacttg 260

                                                                       
Query: 61  tcctaccctgcttcataagcctgactcggttgctctttgcttgcttctctgcgcctactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctaccctgcttcataagcctgactcggttgctctttgcttgcttctctgcgcctactg 320

                                                                       
Query: 121 tttctggcctgtggtatacctacctatttcagagctgctttctgcttgtaacgcatttca 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctggcccgtggtatacctacctatttcagagctgctttctgcttgtaacgcatttca 380

                                                            
Query: 181 cgatagctactttgtgcttgtcactcatatcctggttttatgtatcagc 229
            || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 agaaagctactttgtgcttgtcacccatatcctggttttatgtatcagc 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no369_j06.g1 MSMg01no369_j06.g1 CHROMAT_FILE:
MSMg01no369_j06.g1 PHD_FILE: MSMg01no369_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:21 2005
         (244 letters)



>mm_chr11_80251346_80251989
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaaggccgtacatacttcaggagtcctccaagctctgtgtggatggcaattcagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagaaaggccgtacatacttcaggagtcctccaagctctgtgtggatggcaattcagaaa 385

                                                                       
Query: 61  ataaaatgtacattttaatattagaaacaaaacctttatttaaagagccgggcctcgggg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 ataaaatgtacattttaatattagaaacaaaacctttatttaaagagccgggtctcgggg 325

                                                                       
Query: 121 agctgaatgtgcttgctgctatgtctgatggcccaccttagaccccaggaccaaattcct 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 agctgaatgtgcttgctgctatgtctgatggcccaccttacaccccaggaccaaattcct 265

                                                                       
Query: 181 gccaactgtgttttaagctccacacaagcatatggcatgcatttacatacaatgcataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gccaactgtgttttaagctccacacaagcatatggcatgcatttacatacaatgcataca 205

               
Query: 241 taca 244
           ||||
Sbjct: 204 taca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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