BAC Information

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BAC

Clone NameMSMg01-369M17
Chromosome11 (Build37)
Map Location 57,778,264 - 57,778,572
singlet/doubletsinglet
Overlap genenone
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605
Downstream geneLarp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369M17.T7 (MSMg01no369_m17.b1)MSMg01-369M17.TJ (MSMg01no369_m17.g1)
ACCAG476694AG476695
length764730
length of high quality
(start - end)
338 (61 - 398)309 (69 - 377)
definitionCHROMAT_FILE: MSMg01no369_m17.b1 PHD_FILE: MSMg01no369_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:37 2005CHROMAT_FILE: MSMg01no369_m17.g1 PHD_FILE: MSMg01no369_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATATATTGACACTTAGGTACAGTTTAATGGTTCCTGTTAAGTTTGTAGT
TGGAAAGCAGTATCATTTGTGGAGCTAAGGATGTGGCTCCTCTGGCAGAG
GGCTTCTCTAGCACATACAAAGGCCTGTGCTCAGTCCCAGGTACTGTATA
AAGCAAATATGTTGGCTCATGCTGTGATCTCAGCCCTTGGGAGGTGAATG
AAGTTCATGATCACCCTCGGTGCATAGTAGGTGTGCAGCCAGTCTGTGAT
GTGTAAAGCTGTCACAAACAAAGTTTATCAGTTAACTGTTTTCATTGCTA
AAATCTTTTCCCTTTTCAGGGCAGCAGCAATGCAGACAAGCTGTAAACTT
ATTGGGTACTGGGAGGAGTGGGTAGAGAAGATGAGGATAGCCTTGTCCTT
TGAGTTAGGGTCTGCCTTGGATGTTTGTATTAATCTTGTATATTACATTT
GTCCGTGCTGTTATAAGACCTCTTTTCAATTATTTTTTATCTTAATTTTT
ACCTTATTCCTATTTTGTTATTCTCTTTCCTTCTTTCTTTTCCTCTTATT
TTTTTATTATTTTATTCATACTTCCTTTTACATTTGGCTTCTCCTTTCTT
CCTCCATTCTTTCTCTCCTTTCTTTTTTTCTTCCCGCCTTTTCTTCACTT
TTCCCCCTTTTTTTCTCTCCTATTTTTATTCCTTTCTTTTTCTCTTTCTT
TTCCTTTTTCCTTN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATGAATAATTCCTGAGCTCGCTGGCTGGGCC
CTCTCTGGAAGGAGAGAGTTGCACAGGCAATTTCTTCCGGAGAGAAGTGT
AGGGTTGTAAAATAAAGGGAGGAATCTAGGGTGCCTGTCTGGAAAAGGGC
TCTGGAGACCTCATTGCCATATGAGTCTCCCCATTAAGTGGGTTCATCTG
ACTGCTCCTCTCCAGAGTGGGGTGTGGTGGTCCCTATCATCCTAGCTCTT
GCGAGGTTTTTTTAGGGGGCTTAGAAGTTCGTGGTCATTGGCTGCATATT
GAGTTTGAGGCTAGCCTGGACTACATGAGACCCTAGCTCAAAGAAGAAAG
ACAAACAACAACAAATTACTGGGGCTCCTTGGGAATGACCTCATTGGCAG
AACAAGTCAGTGGATGCCAACAAGTTGTCTGAGAGGAACGAACTTGTTCA
AGATACTGATTGGAGTGGCAGGCTGTATTGCTCAGTGTTTAAAAGCTTTT
TCTGCTCTTCTATATAGTCTGTCTTTTTTTCTCTGCACCTTTTTTGCAAA
CATATTGGGGTTTGTCACCCCTTTTTACCTTTTGTCTGTTCTTTTTTTTT
TCTGTCGGAATTCTATTTTTCTCTCTGGCTCTTCCAGTGTTACCCACGTT
ATCCTATTCTTTTCCTTTTTTTTCCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_m17.g1 MSMg01no369_m17.g1 CHROMAT_FILE:
MSMg01no369_m17.g1 PHD_FILE: MSMg01no369_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:37 2005
         (309 letters)



>mm_chr11_57778064_57778772
          Length = 709

 Score =  516 bits (267), Expect = e-151
 Identities = 298/315 (94%), Gaps = 12/315 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaataattcctgagctcgctggctgggccctctctggaaggagagagttgcacaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaataattcctgagctcgctggctgggccctctctggaaggagagagttgcacaggc 260

                                                                       
Query: 61  aatttcttccggagagaagtgtagggttgtaaaataaagggaggaatctagggtgcctgt 120
           ||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct: 261 aatttcttccggagagaagtgtagggttgtaaaatgaagggaggaacccagggtgcctgt 320

                                                                       
Query: 121 ctggaaaagggctctggagacctcattgccatatgagtctccccattaagtgggttcatc 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggaaaagggccctggagacctcattgccatatgagtctccccattaagtgggttcatc 380

                                                                       
Query: 181 tgactgctcctctccagagtggggtgtggtggtccctatcatcctagctcttgcgaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 tgactgctcctctccagagtggggtgtggtggtccctatcatcctagctcttgcgaggt- 439

                                                                       
Query: 241 ttttta------gggggcttagaagttcgtggtcattggctgcatattgagtttgaggct 294
                |      |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 -----aaaagcagggggcttagaagttcgtggtcattggctgcatagtgagtttgaggct 494

                          
Query: 295 agcctggactacatg 309
           |||||||||||||||
Sbjct: 495 agcctggactacatg 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)