BAC Information

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BAC

Clone NameMSMg01-371E15
Chromosome11 (Build37)
Map Location 31,658,986 - 31,842,829
singlet/doubletdoublet
Overlap geneCpeb4
Upstream genePsme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
Downstream gene4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371E15.T7 (MSMg01no371_e15.b1)MSMg01-371E15.TJ (MSMg01no371_e15.g1)
ACCAG477834AG477835
length755786
length of high quality
(start - end)		514 (80 - 593)457 (45 - 501)
definitionCHROMAT_FILE: MSMg01no371_e15.b1 PHD_FILE: MSMg01no371_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:40 2005CHROMAT_FILE: MSMg01no371_e15.g1 PHD_FILE: MSMg01no371_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,658,986 - 31,659,499)(31,842,377 - 31,842,829)
sequence
NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGCCACCTCAAGCCCCCCT
CCCACACCGCTTGATGTATATCATCCTCAGCTAAGATTCTGGAGTTTGAG
ACTCCCTCCCATCCCTCTCTTTTCTGCCTACATCACCACCTTTCCTTGAC
CTCTAGTTATGGCCATGAAATTAGCAGCCATGCTGTGCAGTGAAGAAGAG
GGGGTTCCTCGACTCAGGGCTTCCTTCAGACAGCTTTGTCCAGTTCTTAC
TGGGGAAACAATGAGAGAAAGATCTCTGTGTGCTCTGCAGAGCAGCCGAC
TGGCAGCTGCAGTCTTCTCTTCTAGCAGGGACTTTTCAGGCTTCCTTTTT
TTCTCCTTTGAAAACATGGGAGCAGGCCCAGCCAGGGAAGCAGAGCTGAG
CCTTGTTCTCTAAAGCAGTGCACGGAGTATGCTAAGCTCCCAAGCCACAT
CTCCAGCTCGAGAGACTTTAGGGAGCTGGAACTGTGTTGTATCCCCAGTG
CGGNTCTGGTCACACAAATCTACGTTTAAATTTTGGATTCCCTGGAGTCT
GATGGAGACACTCGGGGTTGATGACATCAGGACATTTTAAAGCTCCCTAA
ATAATCCATCGTGCTGTCAGATGGAGCCAAAATTGACATCCATAAAAATT
TAATCTGTGGATCCGGGCCCGCTGAAACCCCAAGGGTGGGGGGAAAAAAA
AATGG

CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGACAACATGCCAAATAAAACTATTGCTTATAATTTTTCTAGTCT
TTGGTATTTTGTGATGGCAGCAAAACATGGACTTAGGGGTCTTCAGAAAG
TGGTGCAGGGATGAGGGTCATCTCAGCCAAGCCCTGAAGGATGTAGAGTC
AGCTTTGTGTGGAGCTGAAGTCAGGAATAGGTAAGATGGAGATGGGCAAA
GGAGAGGCCCTGTACCACTATGGGGACCTTGCATTAGAGGCCCATGCACA
GAGGCCCATGCACAGAGGCCCATGCACAGAGGCCCATGCAGAGTGGCTGG
AGCTGTCTGTGGTCAAGAAGAAATAGGGGAGTTTACAGTGGAGGTTGGGG
AAGGAGGTTTTCTCTTAAGGCAGTGAGACAGCTCCCCCTGCTGAGTAAAG
GCAAACCAGAGCTCTAGCTGCAGGAAGCTGGTGGCATAGGCCACCTTAGA
GACCAGAGGAACTTGCCTTTACCATGCAGTTGGTGTTAATGAATGCTAGT
GAAAATGGGGAGCGCTTAATTCCTGGTTCAGGTGCCTTTGTAAACACTTC
CTTTCTTTGTCCCTTCACCTAATGGAGGCCCAAGTTGGTTGTCAGGGGTN
TACTAATATGGTCCTGGTCACTTGGTCACGCCCACTCCCTGCTTTTCTTT
CATCTAATATTCTAATTGACCCGCGACCTTGACTTATCTGATTGGTCGCT
TTTGGGGTTTTCTCTTTTTTTTATTATACTCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_e15.b1 MSMg01no371_e15.b1 CHROMAT_FILE:
MSMg01no371_e15.b1 PHD_FILE: MSMg01no371_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:40 2005
         (514 letters)



>mm_chr11_31658786_31659699
          Length = 914

 Score =  988 bits (511), Expect = 0.0
 Identities = 513/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgccacctcaagcccccctcccacaccgcttgatgtatatcatcctcagctaagattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgccacctcaagcccccctcccacaccgcttgatgtatatcatcctcagctaagattc 260

                                                                       
Query: 61  tggagtttgagactccctcccatccctctcttttctgcctacatcaccacctttccttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagtttgagactccctcccatccctctcttttctgcctacatcaccacctttccttga 320

                                                                       
Query: 121 cctctagttatggccatgaaattagcagccatgctgtgcagtgaagaagagggggttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctagttatggccatgaaattagcagccatgctgtgcagtgaagaagagggggttcct 380

                                                                       
Query: 181 cgactcagggcttccttcagacagctttgtccagttcttactggggaaacaatgagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgactcagggcttccttcagacagctttgtccagttcttactggggaaacaatgagagaa 440

                                                                       
Query: 241 agatctctgtgtgctctgcagagcagccgactggcagctgcagtcttctcttctagcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatctctgtgtgctctgcagagcagccgactggcagctgcagtcttctcttctagcagg 500

                                                                       
Query: 301 gacttttcaggcttcctttttttctcctttgaaaacatgggagcaggcccagccagggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacttttcaggcttcctttttttctcctttgaaaacatgggagcaggcccagccagggaa 560

                                                                       
Query: 361 gcagagctgagccttgttctctaaagcagtgcacggagtatgctaagctcccaagccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagagctgagccttgttctctaaagcagtgcacggagtatgctaagctcccaagccaca 620

                                                                       
Query: 421 tctccagctcgagagactttagggagctggaactgtgttgtatccccagtgcggntctgg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tctccagctcgagagactttagggagctggaactgtgttgtatccccagtgcggttctgg 680

                                             
Query: 481 tcacacaaatctacgtttaaattttggattccct 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 tcacacaaatctacgtttaaattttggattccct 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_e15.g1 MSMg01no371_e15.g1 CHROMAT_FILE:
MSMg01no371_e15.g1 PHD_FILE: MSMg01no371_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:40 2005
         (457 letters)



>mm_chr11_31842173_31843029
          Length = 857

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagacaacatgccaaataaaactattgcttataatttttctagtctttggtatt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaattccagacaacaagccaaataaaactattgcttataatttttctagtctttggtatt 598

                                                                       
Query: 65  ttgtgatggcagcaaaacatggacttaggggtcttcagaaagtggtgcagggatgagggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttgtgatggcagcaaaacatggacttaggggtcttcagaaagtggtgcagggatgagggt 538

                                                                       
Query: 125 catctcagccaagccctgaaggatgtagagtcagctttgtgtggagctgaagtcaggaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 catctcagccaagccctgaaggatgtagagtcagctttgtgtggagctgaagtcaggaat 478

                                                                       
Query: 185 aggtaagatggagatgggcaaaggagaggccctgtaccactatggggaccttgcattaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aggtaagatggagatgggcaaaggagaggccctgtaccactatggggaccttgcattaga 418

                                                                       
Query: 245 ggcccatgcacagaggcccatgcacagaggcccatgcacagaggcccatgcagagtggct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggcccatgcacagaggcccatgcacagaggcccatgcacagaggcccatgcagagtggct 358

                                                                       
Query: 305 ggagctgtctgtggtcaagaagaaataggggagtttacagtggaggttggggaaggaggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggagctgtctgtggtcaagaagaaataggggagtttacagtggaggttggggaaggaggt 298

                                                                       
Query: 365 tttctcttaaggcagtgagacagctccccctgctgagtaaaggcaaaccagagctctagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tttctcttaaggcagtgagacagctccccctgctgagtaaaggcaaaccagagctctagc 238

                                            
Query: 425 tgcaggaagctggtggcataggccaccttagag 457
           |||||||||||||||||||||||||||||||||
Sbjct: 237 tgcaggaagctggtggcataggccaccttagag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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