BAC Information

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BAC

Clone NameMSMg01-371J16
Chromosome11 (Build37)
Map Location 47,326,581 - 47,502,619
singlet/doubletdoublet
Overlap geneLOC628753
Upstream geneLOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
Downstream geneLOC100039647, LOC192895, Hn1l-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371J16.T7 (MSMg01no371_j16.b1)MSMg01-371J16.TJ (MSMg01no371_j16.g1)
ACCAG478069AG478070
length759770
length of high quality
(start - end)		369 (79 - 447)460 (45 - 504)
definitionCHROMAT_FILE: MSMg01no371_j16.b1 PHD_FILE: MSMg01no371_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:07 2005CHROMAT_FILE: MSMg01no371_j16.g1 PHD_FILE: MSMg01no371_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,326,581 - 47,326,949)(47,502,164 - 47,502,619)
sequence
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATAGCTCTGAGCCCCAT
TTTTTAATGGGGTAATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTT
ATATATATTGGATATTAGTCCCCTATCTGATTTAGTATAGGTAAAGATCC
TTGCCCAATCTGTTGCTGGCCTTTTTGTCTTATTGACGGTGCCTTTTGCC
TTGCAGAAGCTGCTTTTGGTATTATGTATATTGTTGTTAAATCCAGCATC
TTGACACTTTTCTGCTATGATATCTATTATAAGTTTTATTGTTGGCATCT
TCTATTTAGGTTTACAACTAACTTGTGTGGGTATATAGTGAAAGTCCACC
TTCACTATTTGCCTTGCACAGGTACAGGATTTCTAATAACAAATCATCTT
TTCCTAGTTGGGTTGTCTCAGCTCCTTTGTAAAAGTTCATGCGCCCATTT
TTGGAACAGCTTATACAGAGGGTCCCTCTTCTGCTCCTTCGGTTTTCTTG
CTTCCTCTTTGATCTGCAGATGGGGGCTTGCCTTTGGGAATTTTCCTTGG
CCTTTTTGGTCTGGGGGTACACGGGCTGACTTTTGTTTCACTTTCCTTTC
TTTGTTAGTCCCTCTTCCGTTTTGCTTTCTTCCTTTTCCTCGTCTTTTAT
CGCTTTCTTTTGTCCATGTCTTCTGTTCTGAGTTTATTACTCTTCTTTTT
CCATCTATC

TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCAGGAGTGCATACATGCTAAGCTGATAGCTTGAGAATTCAAAA
AGAAAAAGAAAAATCGGCCACATTTATTTTGTTTTGTTTTTCTTTTTGTT
CAATTTCTCCATTCTTCTACACTAATTATTCAGGCCCCTCCACCACATCT
GGGCAGCAGCCTTGAAGCCTTGAAGCTCATTATGTCAGGTTGAAAATGAG
AGACCACAGCTGTCAGAGGCAGCATTTGATGGCTTTGAGCTGTTTCCACA
TAGTGAAAAAGGCATACTGAAAGCTGCACAATTGAAAGAATTTGCTGGGT
TTTTCTCTTTAAAATAGTGGCTCTGAGTAGCTGTGAGACCACGTTATTCT
CCCCTAAGCTAACTTATAATAAAACACACACACATACACACACACATCTG
ACTTTTCTTTGTTTGGTTTGATTCTTGTTTTGCTTGAAGATGTAGCAGGG
TGTCTATTGTCAATAACAAATTCTTCTAAAACCAGACAGATATAGAATTT
CCCAAGATGGGGCATTTAAATATAAAAATAACAAAGGCTTTAAGCAGGTG
TGCAGATATCCATATTTGCTTGTTTCTCCTTCATCCAGGGGAGATACAAG
AAGCAATTGGGTCATCTCCCGTGCAGCCTTTGAGTAAAGAACACCTTGTT
GAAACCTTTAATTTTCCCTTGGTTTCCTATTATTATTTCCGTGAGGGTTT
ATAAAAATTTTCCCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_j16.b1 MSMg01no371_j16.b1 CHROMAT_FILE:
MSMg01no371_j16.b1 PHD_FILE: MSMg01no371_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:07 2005
         (369 letters)



>mm_chr11_47326381_47327149
          Length = 769

 Score =  659 bits (341), Expect = 0.0
 Identities = 362/369 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtatagctctgagccccattttttaatggggtaatttgattttctggagtccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtatagctctgagccccattttttaatggggtaatttgattttctggagtccacctt 260

                                                                       
Query: 61  cttgagttctttatatatattggatattagtcccctatctgatttagtataggtaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 261 cttgagttctttatatatattggatattagtcccctatctgatttaggataggtaaaaat 320

                                                                       
Query: 121 ccttgcccaatctgttgctggcctttttgtcttattgacggtgccttttgccttgcagaa 180
           ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ccttgcccaatctgttggtggcctttttgtcttattgacggtgtcttttgccttgcagaa 380

                                                                       
Query: 181 gctgcttttggtattatgtatattgttgttaaatccagcatcttgacacttttctgctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgcttttggtattatgtatattgttgttaaatccagcatcttgacacttttctgctat 440

                                                                       
Query: 241 gatatctattataagttttattgttggcatcttctatttaggtttacaactaacttgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatatctattataagttttattgttggcatcttctatttaggtttacaactaacttgtgt 500

                                                                       
Query: 301 gggtatatagtgaaagtccaccttcactatttgccttgcacaggtacaggatttctaata 360
           ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct: 501 gggtatatagtgaaagtccaccttcactatttgccctgcacagatccaggatttctaata 560

                    
Query: 361 acaaatcat 369
           |||||||||
Sbjct: 561 acaaatcat 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_j16.g1 MSMg01no371_j16.g1 CHROMAT_FILE:
MSMg01no371_j16.g1 PHD_FILE: MSMg01no371_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:07 2005
         (460 letters)



>mm_chr11_47502041_47502900
          Length = 860

 Score =  843 bits (436), Expect = 0.0
 Identities = 451/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcaggagtgcatacatgctaagctgatagcttgagaattcaaaaagaaaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaattccatcaggagtgcatacatgctaagctgatagcttgagaattcaaaaagaaaaag 520

                                                                       
Query: 65  aaaaatcggccacatttattttgttttgtttttctttttgttcaatttctccattcttct 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 519 aaaaatcggccacgtttattttgttttgtttttctttttgttcaatttctccattcttcc 460

                                                                       
Query: 125 acactaattattcaggcccctccaccacatctgggcagcagccttgaagccttgaagctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 acactaattattcaggcccctccaccacatctgggcagcagccttgaagccttgaagctc 400

                                                                       
Query: 185 attatgtcaggttgaaaatgagagaccacagctgtcagaggcagcatttgatggctttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 attatgtcaggttgaaaatgagagaccacagctgtcagaggcagcatttgatggctttga 340

                                                                       
Query: 245 gctgtttccacatagtgaaaaaggcatactgaaagctgcacaattgaaagaatttgctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gctgtttccacatagtgaaaaaggcatactgaaagctgcacaattgaaagaatttgctgg 280

                                                                       
Query: 305 gtttttctctttaaaatagtggctctgagtagctgtgagaccacgttattctcccctaag 364
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 279 gtttttctctttaaaatagtgactctgagtagctgtgcgaccacgttattctcccctaag 220

                                                                       
Query: 365 ctaacttataataaaacacacacacatacacacacacatctgacttttctttgtttggtt 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 219 ctaacttataataaaacacacacacatacacacatacatctgacttttctttgtttggtt 160

                                               
Query: 425 tgattcttgttttgcttgaagatgtagcagggtgtc 460
           ||||||||||||||||||||||||||||||||||||
Sbjct: 159 tgattcttgttttgcttgaagatgtagcagggtgtc 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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