BAC Information

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BAC

Clone NameMSMg01-371L20
Chromosome11 (Build37)
Map Location 104,011,286 - 104,011,670
singlet/doubletsinglet
Overlap geneCrhr1
Upstream geneFmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream gene4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371L20.T7 (MSMg01no371_l20.b1)MSMg01-371L20.TJ (MSMg01no371_l20.g1)
ACCAG478172AG478173
length777760
length of high quality
(start - end)		379 (78 - 456)455 (48 - 502)
definitionCHROMAT_FILE: MSMg01no371_l20.b1 PHD_FILE: MSMg01no371_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:18 2005CHROMAT_FILE: MSMg01no371_l20.g1 PHD_FILE: MSMg01no371_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATCTGAGCTCCACAAACACA
CTGGGGGTGGTGGCTAGTGTGAATACCCTGTAATTAATTGTGGAATGGTT
TTTATAAATATTTTTTCTTTTTTTAAATCTTTTTTTTTTCAGGACAGTTT
GTCACTGCCTCTACTCCACAAGGCCCAGGCATCCATACAACCAGATCTGG
GTCTTCTTAAATCAGAACAAAGTGCATGTAGCCTGAGAACCACTACTCCC
TTTGTGTCTACCCTGTTCTCTCCTTCCAGCCTTAGCACTGGACACTGGCT
GTGTATTCAGAACTACTTTTTAAACTTTGTGCAGTGTGTATGTGTGTGTG
CATGTAGGCATGTGTGTGTGTGTGTTGCATGCCCATGAGTGTGTGCAGCA
CATGATAGTGGAGTTCAAAGGAAGATGTCAGACGCCGTCCTCTATTTCTC
TCTCCCCTTATTCTCAAAGACAGGGTTTGTCCGGGAAAGCCAAACAGGGG
TTGATTGGGGCCCTTGAATAGATTCTGCCCCCTTACTGAACTTTTTAGAG
TCCGGGTTAACACTGAAAATTTTGTTTCTTGTTCTCTCCTGTCGCGTGTT
AAATATTGAAGATTCCTTTTTAATATCCCCCTGTCAATTGGTGATCCTCC
CTTACCCCTCCTCTTTTGCTTCTGCTTTTTTTCCCCTCCTTATTCTTTCT
CCCCTTGCCGTTCTCATCTAGAAAACA

NTGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCTGATGATGTCAGGCTAGTTGGCCATCAATCCCCAGGGATC
CTCCTGTCTGTGCCTCTCCAGTTCTAGAATTACAAATCCTACCACCCCTA
CCCGCCACCTCCCTGCCCGCCACCTCCCCGCCCCGCCACCTCCAGCCCTC
ATGGTTGCAAGGCAGTCACTTTGCTTCCTGAGCTATTCTTCTCCAGTCCT
TAGTTTTGTTTGTTTTGGTTTTTCCTTTTTAAGACACAGTCTTGCTGTGT
AATGCTACGTAACCTTAAATAGGTAATCTTAAACTGGCAGCAATCCTCCT
GCTTCATCCTCTCAAGTGCTGAAATTTCAGGCTTATTGACACTGTGTCAG
GCTTCATTGTTTGTTTTTGTAAATGATGTCAAAGTACATATCTTTAGCTC
TTAAAAAGCATTTTTATTTTGTTTTTTTATGTGTGTGGGTATTTATATTT
GTATAACACTTGTGTACCTGGTGCTTTTGAATCAGAAGATGGCATCAGGT
CTTCTGAAACTGTATTTACAGATTTTGTGTACTGACCTCGCGGTTGCTGG
TATTAATCCACGGCCCTTCGAACAACATACTTCGTCGTTCCACTCTCTTA
TATTCTTCACCCTCCCTTATGTTTTCCGAAAAAATATGATCTTTTTTACC
CCTTTTACCCCTAAAAAATACCAAATCTTCTTTCATCCTGATATTCTTAT
CTTCTATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_l20.b1 MSMg01no371_l20.b1 CHROMAT_FILE:
MSMg01no371_l20.b1 PHD_FILE: MSMg01no371_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:18 2005
         (379 letters)



>mm_chr11_104011054_104011832
          Length = 779

 Score =  658 bits (340), Expect = 0.0
 Identities = 371/386 (96%), Gaps = 9/386 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatctgagctccacaaacacactgggggtggtggctagtgtgaataccctgtaattaa 60
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 617 ttaatctgagctccacaaacacactgggagtggtggccagtgtgaataccctgtaattaa 558

                                                                       
Query: 61  ttgtggaatggtttttataaatattttttctttttttaaatcttttttttttcaggacag 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 557 ttgtggaatggtttttataaatattttttctttttttaaatc-ttttttttccaggacag 499

                                                                       
Query: 121 tttgtcactgcctctactccacaaggcccaggcatccatacaaccagatctgggtcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttgtcactgcctctactccacaaggcccaggcatccatacaaccagatctgggtcttct 439

                                                                       
Query: 181 taaatcagaacaaagtgcatgtagcctgagaaccactactccctttgtgtctaccctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 taaatcagaacaaagtgcatgtagcctgagaaccactactccctttgtgtctaccctgtt 379

                                                                       
Query: 241 ctctccttccagccttagcactggacactggctgtgtattcagaactactttttaaactt 300
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttctcctttcagccttagcactggacactggctgtgtattcagaactactttttaaactt 319

                                                                       
Query: 301 tgtgcagtgtgtatgtgtgtgtgcatgtaggcatgtgtg--------tgtgtgtgttgca 352
           ||||||||||||||||| |||||||||||||||||||||        |||||||||||||
Sbjct: 318 tgtgcagtgtgtatgtgcgtgtgcatgtaggcatgtgtgtgtgtgtatgtgtgtgttgca 259

                                     
Query: 353 tgcccatgagtgtgtgcagcacatga 378
           ||||||||||||||||||||||||||
Sbjct: 258 tgcccatgagtgtgtgcagcacatga 233


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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