BAC Information

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BAC

Clone NameMSMg01-372E10
Chromosome11 (Build37)
Map Location 32,357,024 - 32,357,578
singlet/doubletsinglet
Overlap geneUbtd2
Upstream gene2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b
Downstream gene1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372E10.T7 (MSMg01no372_e10.b1)MSMg01-372E10.TJ (MSMg01no372_e10.g1)
ACCAG478577AG478578
length742751
length of high quality
(start - end)
556 (72 - 627)244 (66 - 309)
definitionCHROMAT_FILE: MSMg01no372_e10.b1 PHD_FILE: MSMg01no372_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:59 2005CHROMAT_FILE: MSMg01no372_e10.g1 PHD_FILE: MSMg01no372_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATAATTGCGGCCGCTAAANGAATCACTATTCCAAAGAGGATGNGNGGAAT
TCTCCAATCTCCTTCACAGAAGTAATCTACCTAAGATGACTTTTTTTTTT
GGATATTTTATACTCACATTAAAAATACTTGGATCCAGAAGGAAAAGGAA
AATACAATATCCAAGTATTTCAGATTATATCTATTATGAGCCAGCTGACT
TGGAAAGGCTAGGGTCATTCTAAAATGGTGGTGCTCACATAGCACTATGA
ATGTTAACCATCATGAAATACATCTGAAGGCTGCATTATATTCCATGTTG
ATAAAAATCAATATATCCAGATTAAAACTGCTGATGTTTGAAAAGCTAAG
ATCTTTGCTAACACCCTTAGGAAAAAAGTCATTCCCTTTCAAACAACAAC
AACAAAAAAGAACTGCTAACATGTTAAACTGAAACACATATTACATTAAC
TTTTTGTTGTTTTTTTGGTAACACAGTTTTGCTATGCAGCCAGGTCTGGC
CTGGAGCTTAAGATCATCTAGCTCCAGCCTTCAGAGTTGCTGGCTCCAGT
TAGCTCTTACCTCTCATGACAGTAATGGAGAACAAAGGCTTCCAAAATTA
AATTCCAGAAAGAAATCTTTTATCCCCTATAGACCCGTCTTTCTGCCAGT
TACATCCAGGCTATCCCGCGTCCTTTCCCCAGAAGAAATAGACGTGCTAC
TCCCTCCTTTATAACTCTTCTTTAACAAACCGCTCAATATGG
AATTTGGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGCCACGCGCAATTCTTTCTTAAGCTGGGCATGATGACCTACACCT
TTAACCCCAGCACTAAGAGAAGTAGAAACAGGCAGATCTAAAAGAGCCAG
CCTGGTCTACATAGCAAGTTCAAGGACAGCCAATGCTGCACAGTAAGACC
TTAACTCAAGAAACAGGGCTGGGATTCTTTCTCCCACTTAATTTTGAGAT
GCGGTCTCACTATGAAGCCCTGGCTGTCCTGCAACTTGCTATGTAGACCA
GGTTGCCCTCATGCTCACCAAGATGCCTCTAACTCTGCCTCTTGTATGTT
GGCACTTACCACTAAGTATGTATGGTGCACTTACCACTAAGTCCACCCCA
AAAGAATGAGTTCTAAAATAGAAGCTTGATTAGTTAGACTTGATCCAAAT
TAAAACGTTGACTTTATAAAAAGGACTATTAAGATGAACTGAGGGCTGGG
TGAGATGCCCTAATGTGTACACACCCTTATAACCAGGCTTATCAGCGTGA
CGCAGTACTCCTCTTGTCTCCCCCATGTGCACATGTGTGCCCTTCCTCTC
CAACCTATTCATGACTCCTTTTCCACGCAATACTTTCTGCTTATTTTTAA
CCCCAGGTGAAGGCCTCTCCCTTTACCACCCTCTATCCCCCCCCCATTAA
TCCCTTTTTCCCCCCAATAGCCTTTTATCCCTCCTGTTCAATACACCGTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_e10.b1 MSMg01no372_e10.b1 CHROMAT_FILE:
MSMg01no372_e10.b1 PHD_FILE: MSMg01no372_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:59 2005
         (556 letters)



>mm_chr11_32356824_32357778
          Length = 955

 Score = 1036 bits (536), Expect = 0.0
 Identities = 551/556 (99%), Gaps = 1/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaatctacctaagatgacttttttttttggatattttatactcacattaaaaatacttg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gtaatctacctaagatgac-tttttttttggatattttatactcacattaaaaatacttg 697

                                                                       
Query: 61  gatccagaaggaaaaggaaaatacaatatccaagtatttcagattatatctattatgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gatccagaaggaaaaggaaaatacaatatccaagtatttcagattatatctattatgagc 637

                                                                       
Query: 121 cagctgacttggaaaggctagggtcattctaaaatggtggtgctcacatagcactatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cagctgacttggaaaggctagggtcattctaaaatggtggtgctcacatagcactatgaa 577

                                                                       
Query: 181 tgttaaccatcatgaaatacatctgaaggctgcattatattccatgttgataaaaatcaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 576 tgttaaccatcatgaaatacatctgaaggctgcattatactccatgttgataaaaatcaa 517

                                                                       
Query: 241 tatatccagattaaaactgctgatgtttgaaaagctaagatctttgctaacacccttagg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tataaccagattaaaactgctgatgtttgaaaagctaagatctttgctaacacccttagg 457

                                                                       
Query: 301 aaaaaagtcattccctttcaaacaacaacaacaaaaaagaactgctaacatgttaaactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaaaaagtcattccctttcaaacaacaacaacaaaaaagaactgctaacatgttaaactg 397

                                                                       
Query: 361 aaacacatattacattaactttttgttgtttttttggtaacacagttttgctatgcagcc 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaacacatattacagtaactttttgttgtttttttggtaacacagttttgctatgcagcc 337

                                                                       
Query: 421 aggtctggcctggagcttaagatcatctagctccagccttcagagttgctggctccagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aggtctggcctggagcttaagatcatctagctccagccttcagagttgctggctccagtt 277

                                                                       
Query: 481 agctcttacctctcatgacagtaatggagaacaaaggcttccaaaattaaattccagaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agctcttacctctcatgacagtaatggagaacaaaggcttccaaaattaaattccagaaa 217

                           
Query: 541 gaaatcttttatcccc 556
           ||| ||||||||||||
Sbjct: 216 gaattcttttatcccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space:   515970
Effective search space used:   515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)