BAC Information

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BAC

Clone NameMSMg01-372F15
Chromosome11 (Build37)
Map Location 59,961,305 - 59,961,755
singlet/doubletsinglet
Overlap geneRai1
Upstream geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt
Downstream geneSrebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372F15.T7 (MSMg01no372_f15.b1)MSMg01-372F15.TJ (MSMg01no372_f15.g1)
ACCAG478635AG478636
length756778
length of high quality
(start - end)		468 (64 - 531)450 (69 - 518)
definitionCHROMAT_FILE: MSMg01no372_f15.b1 PHD_FILE: MSMg01no372_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:04 2005CHROMAT_FILE: MSMg01no372_f15.g1 PHD_FILE: MSMg01no372_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATGGTTCCCCATTCAAAGTACATTCACATTTAATGTCCTTGTGCAGCAGC
CACAACCATCATTTCCAGCTTTTTAAAATCTATCCCCACAAGCCGGGTGT
GGTGGCTCATGCCTTTAATCCCAGTACTCGGGAGGCAGAGGCAGGCAGAT
TTCTGGGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCA
GGGCTAGACAGAGAAACCCTTTCTCAAAAAACCAAAACCAAAACGAAACA
AAACAACAACAACTTTTAAAAAAAACCCTTTCCCCACAAAATTGTGTGCC
CATTAAACACTAACTCTACACTCCCTCATGTTCCCAAGCAACTACCATCC
TATATTCTATCTATGAATCTGACTGCCCAAGAGCCTCGTATAAATGAAAC
TATATTGTATGTATCTTTTGAAACCTGGCTTGACTCACTTGTTCTATCTC
CAAGGCTCATCCTTGGTAGAGAGCATGTCAGAATTTTTCAAGACAGGGCC
TCACTATGTATCCTTGACTATGCTGTACCTCTTTGTAGACCAGACTGGCC
CTCAACTCACTATAATCTCCTGCCTCTGAGTGCAGAACTAAAATTGTGTG
CCTCTAAACCCCTTTTTTTCTTTTTAAACGTGGAAAACATTTTCACCCTA
TGTCTAACAATTACCCGGCAAACTTTCTTTCGTTGCGGCACCCTCTCTTT
TTTTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTGGTTGGTGCCTATGAGTACACACAAAGAC
TGAACCCAGGCTTGGAGCAGGCCTGAAGCAGGAGTAGGTTCGAGCAAGGC
AGAGCTTCCTAGGACCCTCATGTCCTAGGGCCCTAGGGAGATGGACACCG
ATCGTAGGTCACTCTGTGACTGCAGAGTAATTTACCCAGGGCCATGCTCT
GAGCTGCCATTCATGATTTTCTGCTGTGTAATACAAACATAACCTCTCTG
GGCATTGGATCTGCAAAGCGCTCATTTTTCTCCTACTGTTCATTGTATCA
TTTTGATTGGCTGAGGAAGGCAAGCAAACCTCACAGAGAAGGGGATGACC
CTTCATGTTCCCCTCTCTAGTGGTCTCAAAGAGACCTACTGAGCCCATTT
TTGTGCCGGGGGCTTTTACAACACTCACCACCTACTAAAGGTGGGCTCTG
TCATGCTACATCTGACAGCACAACATACAGAACCCTCATGGTTGACGACC
GCCTCTGCCAAGGAAAGTTTGCTTGGTGTTTTCTACCAGCTATCCCTACA
TTGTTTCTCTGAAAAAAATTGCTTGTTTGAAATAAATCCGGCGGAAGCTT
GGTGCTTGTGAATGTACACTCCCCCAAGGGTGTAGGTTTTGTCCGATCAC
GGTTTTTTTTTAATTCTCCCCTTATCCACAAACCCCCCCTTTGGGGTTTT
TTTTATTAAGCCACTTGTGTGGTCGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_f15.g1 MSMg01no372_f15.g1 CHROMAT_FILE:
MSMg01no372_f15.g1 PHD_FILE: MSMg01no372_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:04 2005
         (450 letters)



>mm_chr11_59961105_59961955
          Length = 851

 Score =  849 bits (439), Expect = 0.0
 Identities = 448/451 (99%), Gaps = 1/451 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggttggtgcctatgagtacacacaaagactgaacccaggcttggagcaggcctgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggttggtgcctatgagtacacacaaagactgaacccaggcttggagcaggcctgaag 260

                                                                       
Query: 61  caggagtaggttcgagcaaggcagagcttcctaggaccctcatgtcctagggccctaggg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggagtaggtttgagcaaggcagagcttcctaggaccctcatgtcctagggccctaggg 320

                                                                       
Query: 121 agatggacaccgatcgtaggtcactctgtgactgcagagtaatttacccagggccatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatggacaccgatcgtaggtcactctgtgactgcagagtaatttacccagggccatgct 380

                                                                       
Query: 181 ctgagctgccattcatga-ttttctgctgtgtaatacaaacataacctctctgggcattg 239
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagctgccattcatgaattttctgctgtgtaatacaaacataacctctctgggcattg 440

                                                                       
Query: 240 gatctgcaaagcgctcatttttctcctactgttcattgtatcattttgattggctgagga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctgcaaagcgctcatttttctcctactgttcattgtatcattttgattggctgagga 500

                                                                       
Query: 300 aggcaagcaaacctcacagagaaggggatgacccttcatgttcccctctctagtggtctc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcaagcaaacctcacagagaaggggatgacccttcatgttcccctctctagtggtctc 560

                                                                       
Query: 360 aaagagacctactgagcccatttttgtgccgggggcttttacaacactcaccacctacta 419
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagagaactactgagcccatttttgtgccgggggcttttacaacactcaccacctacta 620

                                          
Query: 420 aaggtgggctctgtcatgctacatctgacag 450
           |||||||||||||||||||||||||||||||
Sbjct: 621 aaggtgggctctgtcatgctacatctgacag 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 851
Length adjustment: 10
Effective length of query: 440
Effective length of database: 841
Effective search space:   370040
Effective search space used:   370040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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