BAC Information

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BAC

Clone NameMSMg01-372G01
Chromosome11 (Build37)
Map Location 89,801,612 - 89,986,311
singlet/doubletdoublet
Overlap genePctp, Tmem100
Upstream geneScpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372G01.T7 (MSMg01no372_g01.b1)MSMg01-372G01.TJ (MSMg01no372_g01.g1)
ACCAG478655AG478656
length731738
length of high quality
(start - end)
250 (64 - 313)435 (71 - 505)
definitionCHROMAT_FILE: MSMg01no372_g01.b1 PHD_FILE: MSMg01no372_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:06 2005CHROMAT_FILE: MSMg01no372_g01.g1 PHD_FILE: MSMg01no372_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,801,612 - 89,801,860)(89,985,941 - 89,986,311)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATT
CTCAGATATACATCTACTGACCTTCTGTTGAGTGATTGGCCAGTATTGGG
AGTGTCCCACAGTGGGGGCCTAAGAGGGCTGAAAAGATCTAACCAAAACC
ATTTTGTGGGAACCTTCAAAACGAAAAGTGAGCCAGAAATGGATCACAAT
CCCAGCTCCTGTTTTATGATCTCAGCCCACTAGGTTTATATTCTCAGATC
TCACTATGAGTCTCCTACCCTCCACCCGCATCTGTCTTTGAGACAGAATA
TCACTCTACATATTTTTGTCTATCCTGAAACGCTATGTAGACCAGGATGG
CTTCAAATTCACAGAGATCCGCCCACTGCTGCTTCACGAGTGGTGGGTTT
AAAAGCACTATCAAACCCGGCTCCTCGCCACCTCTTAGCTCAGGCTTTGC
CTCGTGAGTAAAGAAAAGAAAGTTTCTTGGCAGATGCATAGGTGCTGGAA
ATCTATCTCAGCAGAGTGCTTGGTTTTACCCAGCTGGCAGTACCCCCAAG
TCAATGCTATCATGGTACTGAGCATCGAATGCTCCCTTGCCTTTTGTATT
GGCCGGTAACACTCTACTCGCTAACAGTATTCCTTGCCCTCCTTTTTCAG
TATTTTTACCCCCGCCTTTTTGCCCTTATTCCTCCCAACACCCTTATCCT
CTTCTTTCTCCCCCGTTCTGTAGGTAAGCTC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGTGAAACCCATGGTTCTGAGCCTGTC
TCCATTGGGAGGAGGCTATAGGTACATTTATGCATTTTTAAAAAAATTTT
CTTCTCAATAGTAATGGATCATCTGTTTCCAGAAATGTAACCATTTCTTC
TATGTAATGTGATTGGCCTATACATTACTTATCTCATGATGTCTTGAGTT
CAGTTTGTTTTTATAATTTCTCAGGTAGCAAGTTGGATCGCTCATCCGAG
ACCACACATCTTTTCTTATGAGTTGTTTCCTGTTAAAATGTCCTTCGTGG
GAGCTTTTGCTGTACTCCTTAGGCTTTGGAGTTTGGCATTGTCTTCATGC
GTTTCCAAATGTTTTCCAATTTCTTTAGCTCATTCATTGTTCAAGAACGT
ATTGTTTAATATCCACATACTTGGGAAACTCCCCTTATCTTTTGCTACTC
ATGTGTAGACATGTGATATTACTGCAACTTTAAATTTGGGCATGATCCAA
GATGCTATTTGCTCTGTACAATTGCCTATGCGCCTTTAATGTATCCGTAT
TTTCCTACCCATGCTCCTGTAGCTTCTATGCCACTCTATCTCGCCCCATT
TGTTTTCCCCCACTTTTTGCCCCCTTTTCCCACCTTTTAAGTTTTAACTC
CTCATCCTCCATTTTTCTTGTTCTTCCCAACGATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_g01.b1 MSMg01no372_g01.b1 CHROMAT_FILE:
MSMg01no372_g01.b1 PHD_FILE: MSMg01no372_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:06 2005
         (250 letters)



>mm_chr11_89801412_89802061
          Length = 650

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctactgaccttctgttgagtgattggccagtattgggagtgtcccacagtgggggcctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactgaccttctgttgagtgattggccagtattgggagtgtcccacagtgggggcctaa 260

                                                                       
Query: 61  gagggctgaaaagatctaaccaaaaccattttgtgggaaccttcaaaacgaaaagtgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggctgaaaagatctaaccaaaaccattttgtgggaaccttcaaaacgaaaagtgagc 320

                                                                       
Query: 121 cagaaatggatcacaatcccagctcctgttttatgatctcagcccactaggtttatattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaatggatcacaatcccagctcctgttttatgatctcagcccactaggtttatattc 380

                                                                       
Query: 181 tcagatctcactatgagtctcctaccctccacccgcatctgtctttgagacagaatatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagatctcactatgagtctcctaccctccacccgcatctgtctttgagacagaatatca 440

                    
Query: 241 ctctacata 249
           |||||||||
Sbjct: 441 ctctacata 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no372_g01.g1 MSMg01no372_g01.g1 CHROMAT_FILE:
MSMg01no372_g01.g1 PHD_FILE: MSMg01no372_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:06 2005
         (435 letters)



>mm_chr11_89985941_89986775
          Length = 835

 Score =  694 bits (359), Expect = 0.0
 Identities = 368/371 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtgaaacccatggttctgagcctgtctccattgggaggaggctataggtacattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctggtgaaacccatggttctgagcctgtctccattgggaggaggctataggtacattta 312

                                                                       
Query: 61  tgcatttttaaaaaaattttcttctcaatagtaatggatcatctgtttccagaaatgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgcatttttaaaaaaattttcttctcaatagtaatggatcatctgtttccagaaatgtaa 252

                                                                       
Query: 121 ccatttcttctatgtaatgtgattggcctatacattacttatctcatgatgtcttgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccatttcttctatgtaatgtgattggcctatacattacttatctcatgatgtcttgagtt 192

                                                                       
Query: 181 cagtttgtttttataatttctcaggtagcaagttggatcgctcatccgagaccacacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cagtttgtttttataatttctcaggtagcaagttggatcgctcatccgagaccacacatc 132

                                                                       
Query: 241 ttttcttatgagttgtttcctgttaaaatgtccttcgtgggagcttttgctgtactcctt 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttttcggatgagttgtttcctgttaaaatgtccttcgtgggagcttttgctgtactcctt 72

                                                                       
Query: 301 aggctttggagtttggcattgtcttcatgcgtttccaaatgttttccaatttctttagct 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  aggctttggtgtttggcattgtcttcatgcgtttccaaatgttttccaatttctttagct 12

                      
Query: 361 cattcattgtt 371
           |||||||||||
Sbjct: 11  cattcattgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)