Query= MSMg01no372_h12.b1 MSMg01no372_h12.b1 CHROMAT_FILE:
MSMg01no372_h12.b1 PHD_FILE: MSMg01no372_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:13 2005
(484 letters)
>mm_chr11_21040606_21041491
Length = 886
Score = 882 bits (456), Expect = 0.0
Identities = 476/486 (97%), Gaps = 8/486 (1%)
Strand = Plus / Plus
Query: 4 ggaattccgcatt----tccatgacagaccagaggcaggtagaaatcaaaagaaaa-atc 58
||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 204 ggaattccgcattaaaa---atgacagaccagaggcaggtagaaatcaaaagaaaatatc 260
Query: 59 ttgattctctaaggctgtctgagttctctgggtttattttcttcttggcatatgacatgc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgattctctaaggctgtctgagttctctgggtttattttcttcttggcatatgacatgc 320
Query: 119 ttatgttttgccccacctccatgtgcaatgggagcacattttcagcagtgcccacagtgt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgttttgccccacctccatgtgcaatgggagcacattttcagcagtgcccacagtgt 380
Query: 179 aacttctcaccctcgaggccttgtcagccctcccagcccacttcatttcctcaccaagtt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttctcaccctcgaggccttgtcagccctcccagcccacttcatttcctcaccaagtt 440
Query: 239 ttagaggctaggtgaggaaatgtaaccgtaagtttaaaagtagtcagtgtaaaagtagag 298
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagaggccaggtgaggaaatgtaaccgtaagtttaaaagtagtcagtgtaaaagtagag 500
Query: 299 gaagttttcagtcctcattttgccttggaatttctctttccagtttatagcacagactga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagttttcagtcctcattttgccttggaatttctctttccagtttatagcacagactga 560
Query: 359 attaattcagtaatgtggggtccagataagaacaattacagagttccttgacttctagaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaattcagtaatgtggggtccagataagaacaattacagagttccttgacttctagaa 620
Query: 419 gttgtacataagcattacatcatctatgttaggtccttgttgggttaaataaatgagctg 478
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 gttgtacataagcattacatcatctatgttaggtccttgttaggttaaataaatgagctg 680
Query: 479 cattag 484
||||||
Sbjct: 681 cattag 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 886
Length adjustment: 10
Effective length of query: 474
Effective length of database: 876
Effective search space: 415224
Effective search space used: 415224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_h12.g1 MSMg01no372_h12.g1 CHROMAT_FILE:
MSMg01no372_h12.g1 PHD_FILE: MSMg01no372_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:13 2005
(439 letters)
>mm_chr11_21223731_21224571
Length = 841
Score = 799 bits (413), Expect = 0.0
Identities = 434/441 (98%), Gaps = 2/441 (0%)
Strand = Plus / Minus
Query: 1 ttaacctatcatccaccaccttcattattttgttgagttgtttgtgtcattgaacagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttaacctatcatccaccaccttcattattttgttgagttgtttgtgtcattgaacagact 582
Query: 61 tactattttgaatgacctgtttggaattacatctaactcatttggaagaggcatatt-t- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 581 tactattttgaatgacctgtttggaattacatctaactcatttggaagaggcatattgtc 522
Query: 119 taggtttttttcatacattaagatttggacatctaatgttctttgctttttttaatcagc 178
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 521 taggtttttttcatacattgggatttggacatctaatgttctttgctttttttaatcagc 462
Query: 179 tatactttttcaattgaagtacttggaatattcaagtggcacttatttgtggtaatgcca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tatactttttcaattgaagtacttggaatattcaagtggcacttatttgtggtaatgcca 402
Query: 239 agtgtttatttgagaaaataattcttcagtctaggagtacctgccctaagctctacatta 298
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agtgtgtagttgagaaaataattcttcagtctaggagtacctgccctaagctctacatta 342
Query: 299 ttccccaaatagggtactgactgggagagccacagctgtttgttagccccactatgcact 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttccccaaatagggtactgactgggagagccacagctgtttgttagccccactatgcact 282
Query: 359 tattacactagcattattaggacaaaggcagtttacaggagaataaatttactctatcat 418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tattacactagcgttattaggacaaaggcagtttacaggagaataaatttactctatcat 222
Query: 419 ggtttgaaggcatggcaggag 439
|||||||||||||||||||||
Sbjct: 221 ggtttgaaggcatggcaggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 841
Length adjustment: 9
Effective length of query: 430
Effective length of database: 832
Effective search space: 357760
Effective search space used: 357760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
