Query= MSMg01no372_i19.b1 MSMg01no372_i19.b1 CHROMAT_FILE:
MSMg01no372_i19.b1 PHD_FILE: MSMg01no372_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:19 2005
(245 letters)
>mm_chr11_5681212_5681857
Length = 646
Score = 429 bits (222), Expect = e-125
Identities = 240/246 (97%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 1 gagactccgaaccaggactgcaagaccagtct-tgccctcaccgctgcttctgtgccctc 59
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 446 gagactccgaaccagaactgcaagaccagtctgtgccctcaccgctgcttctgtgccctc 387
Query: 60 ctgtgttgaggacaatgtcagaggacttggacaaaggaaatactttaccaggtcttgctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgtgttgaggacaatgtcagaggacttggacaaaggaaatactttaccaggtcttgctg 327
Query: 120 agcaacagatgaaatgcagagaacagtatttatgctttgccctaaatctaccatgactca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agcaacagatgaaatgcagagaacagtatttatgctttgccctaaatctaccatgactca 267
Query: 180 taacaaagtggcttcagcgagcccaaggtcctaacggtagttcctacagctagagctgcc 239
|||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 266 aaacaaactggcttcatcgagcccaaggtcctaaccgtagttcctacagctagagctgcc 207
Query: 240 cgtggg 245
||||||
Sbjct: 206 cgtggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space: 150332
Effective search space used: 150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no372_i19.g1 MSMg01no372_i19.g1 CHROMAT_FILE:
MSMg01no372_i19.g1 PHD_FILE: MSMg01no372_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:19 2005
(460 letters)
>mm_chr11_5529414_5530273
Length = 860
Score = 874 bits (452), Expect = 0.0
Identities = 458/460 (99%)
Strand = Plus / Plus
Query: 1 aggacctggcattttgtagacttttagtaagtaactgctcttaacattccttcttctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacctggcattttgtagacttttagtaagtaactgctcttaacattccttcttctcca 260
Query: 61 aacttgaaatactgtgtggttttatgaaatgaagagataatcccatggcagatctaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttgaaatactgtgtggttttatgaaatgaagagataatcccatggcagatctaatat 320
Query: 121 ttgcatggtggtcttttttgcttttttagatttacttttattctaagtatgtgttttgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcatggtggtcttttttgcttttttagatttacttttattctaagtatgtgttttgcc 380
Query: 181 tgcatgcatgtctgtaactggacttagagaagattgtgagccagcacatgggtgctggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatgcatgtctgtaactggacttagagaagattgtgagccagcacatgggtgctggga 440
Query: 241 atcgaacctgggtcctctggaagaacagccatccctccaacccctctcagtacttttctt 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 atcgaacctgggtcctctggaagaacagccatcccaccaacccctctcagtacttttctt 500
Query: 301 actactttcacattttagtcaaccacctcccatcagtgatttcccactttatatctagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actactttcacattttagtcaaccacctcccatcagtgatttcccactttatatctagat 560
Query: 361 tgtcgaaattcttgtttaccaaaatgagagtcctaccatcccatgcccatgttcaccaag 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcgaaactcttgtttaccaaaatgagagtcctaccatcccatgcccatgttcaccaag 620
Query: 421 atgtagtcatggcaaatatggagctttgcaacaaaagtag 460
||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtagtcatggcaaatatggagctttgcaacaaaagtag 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
