BAC Information

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BAC

Clone NameMSMg01-372L18
Chromosome11 (Build37)
Map Location 36,746,946 - 36,930,886
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneWwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372L18.T7 (MSMg01no372_l18.b1)MSMg01-372L18.TJ (MSMg01no372_l18.g1)
ACCAG478929AG478930
length783749
length of high quality
(start - end)		445 (36 - 480)351 (67 - 417)
definitionCHROMAT_FILE: MSMg01no372_l18.b1 PHD_FILE: MSMg01no372_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:33 2005CHROMAT_FILE: MSMg01no372_l18.g1 PHD_FILE: MSMg01no372_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,930,446 - 36,930,886)(36,746,946 - 36,747,296)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCA
TTCTATTTTCAGACCTATTTCAAACGTTTTGATGACTCAGAAGCTGAATT
GGAGCAAATGGGACATGATCTAAATACTACAAGGTGACACAAAATTCAAC
ATGAGGAGGGACAAATTAAAAAGGCAGTAATTGCAGTTATTCATCTTAAA
TTAGTTTATACTGAGAGAAGCAACGCCACAGTGCTGAAGTTTATGTTTGG
GTATCACTGGCGTCATTATTCAAGCACTTGGTTCTAGAAATAGGAAAATA
ATGAGACTGGCGGAATCTTTAACAAAATAAGAGTTGTTTTTCTTTTCTGG
AAGTTTAAAGTGTCTTTGCATTTATGTTAATGATTCAAAGAGTTATATCA
TGCTCCCATAATAATCAGCAGTAGGATAATTAATTTCAGCCATTTGGAGA
GTTTTTTGTTTGTATGGTTGGTTGGCTGGTTGATTGATTTCTTTTTTTTT
CTGAGACACGCTTTTTCTGTGCACCTCCGGCTGTTCTGGAAATTACTTAG
AACATCACGTCTGGCTCTTATTCCCATATTTGCCCGTCTCTAGTCTCTCT
TGTGTTTCGGATTTACGGTTTTGTGCCACCACTCCTTCCTCTCATTTGCC
AGTTTCCCTTTCTCCTTTTTCTTACCTCCCCACGCTTAAATATGCCCGCA
AATTGCACTAATCTAATACCGTTACCCTTCTATTCACGTCTTTTTCCCAC
ACCCCCATTTTTCCTCATTCAACTTTTCCCCCN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTGTCACATTGGCTTCGCTGTCCTTCTCAGA
AAGACAGTGAGCCCTTCATTAGCAGGAATGACCAGGGACAGAGATGAAGT
CAGAATGGCACAGGAAGCTTATTTTGCTCTGGAAATGATCCTTCTAGGAA
CACTTAAAATCCAGAGATTTCATGAACAATTTCCAGCTTTCCTCTGTTCT
TCAGAAGCTGGAATACACAGTAGAGTTAAACCAGAATTCTACCATGAAAC
TGATGTGCCTTTCCTAAGACATACTATCTGGACATATATGCTCCAAAATG
AGAGCAGTCTCCAGCATGCCATGCCATCAAAAGCCTGGTCTACTTCATCT
ATCCTATGTATCTTGTCTAGNCCCTTGTGAATAAGGAGCATTTTTGGCCT
CTGGCCAAAACATCCCCCCCCCTTAAGGATTGTCCCCCGGAAAAAAGGTT
TTTAAACTTTTTATCAATGGGGTGGATTTTTTTTTTTTCCCAATTCCCCC
CCTTTTTTGGAGGGGGAAACCCCCCCCCCCTCCCCCGCGTGTGTTCCTTT
CCTTTCCCCTTCCGGGGCGCCCCAACCTAACCCCTTTTTTTCTTCTTTTT
TTCCCTTCCTTTCCCGCTATTTTTCCCCTCTTTTTTCTTCTTTTTTCCTC
CCGCCCCCCCTTTTCCCCCCCTTCTTTTATTTCCCTTCTTTCCCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_l18.b1 MSMg01no372_l18.b1 CHROMAT_FILE:
MSMg01no372_l18.b1 PHD_FILE: MSMg01no372_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:33 2005
         (445 letters)



>mm_chr11_36930242_36931086
          Length = 845

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcattctattttcagacctatttcaaacgttttgatgactcagaagctgaat 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gaattcattcaggctattttcagacctatttcaaacgttttgatgactcagaagctgaat 586

                                                                       
Query: 65  tggagcaaatgggacatgatctaaatactacaaggtgacacaaaattcaacatgaggagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tggagcaaatgggacatgatctaaatactacaaggtgacacaaaattcaacatgaggagg 526

                                                                       
Query: 125 gacaaattaaaaaggcagtaattgcagttattcatcttaaattagtttatactgagagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gacaaattaaaaaggcagtaattgcagttattcatcttaaattagtttatactgagagaa 466

                                                                       
Query: 185 gcaacgccacagtgctgaagtttatgtttgggtatcactggcgtcattattcaagcactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gcaacgccacagtgctgaagtttatgtttgggtatcactggcgtcattattcaagcactt 406

                                                                       
Query: 245 ggttctagaaataggaaaataatgagactggcggaatctttaacaaaataagagttgttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggttctagaaataggaaaataatgagactggcggaatctttaacaaaataagagttgttt 346

                                                                       
Query: 305 ttcttttctggaagtttaaagtgtctttgcatttatgttaatgattcaaagagttatatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttcttttctggaagtttaaagtgtctttgcatttatgttaatgattcaaagagttatatc 286

                                                                       
Query: 365 atgctcccataataatcagcagtaggataattaatttcagccatttggagagttttttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atgctcccataataatcagcagtaggataattaatttcagccatttggagagttttttgt 226

                                
Query: 425 ttgtatggttggttggctggt 445
           |||||||||||||||||||||
Sbjct: 225 ttgtatggttggttggctggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_l18.g1 MSMg01no372_l18.g1 CHROMAT_FILE:
MSMg01no372_l18.g1 PHD_FILE: MSMg01no372_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:33 2005
         (351 letters)



>mm_chr11_36746746_36747496
          Length = 751

 Score =  679 bits (351), Expect = 0.0
 Identities = 351/351 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttgtcacattggcttcgctgtccttctcagaaagacagtgagcccttcattagcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttgtcacattggcttcgctgtccttctcagaaagacagtgagcccttcattagcagg 260

                                                                       
Query: 61  aatgaccagggacagagatgaagtcagaatggcacaggaagcttattttgctctggaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaccagggacagagatgaagtcagaatggcacaggaagcttattttgctctggaaat 320

                                                                       
Query: 121 gatccttctaggaacacttaaaatccagagatttcatgaacaatttccagctttcctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatccttctaggaacacttaaaatccagagatttcatgaacaatttccagctttcctctg 380

                                                                       
Query: 181 ttcttcagaagctggaatacacagtagagttaaaccagaattctaccatgaaactgatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttcagaagctggaatacacagtagagttaaaccagaattctaccatgaaactgatgt 440

                                                                       
Query: 241 gcctttcctaagacatactatctggacatatatgctccaaaatgagagcagtctccagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctttcctaagacatactatctggacatatatgctccaaaatgagagcagtctccagca 500

                                                              
Query: 301 tgccatgccatcaaaagcctggtctacttcatctatcctatgtatcttgtc 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgccatgccatcaaaagcctggtctacttcatctatcctatgtatcttgtc 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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