Query= MSMg01no373_d12.b1 MSMg01no373_d12.b1 CHROMAT_FILE:
MSMg01no373_d12.b1 PHD_FILE: MSMg01no373_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:08 2005
(540 letters)
>mm_chr11_79091539_79092479
Length = 941
Score = 1002 bits (518), Expect = 0.0
Identities = 536/542 (98%), Gaps = 3/542 (0%)
Strand = Plus / Plus
Query: 1 ccagcactggggaggtggagcagaaattcaaggtcatccttggcaacaaggggagttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagcactggggaggtggagcagaaattcaaggtcatccttggcaacaaggggagttcaa 260
Query: 61 ggacagccggggatatcagagatcctgtctcaaggaacaactttttcacaagactcactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacagccggggatatcagagatcctgtctcaaggaacaactttttcacaagactcactc 320
Query: 121 aacctctcagtgtcacaggggggcac-tcatagagaaaatcagagtggggccaggggtgg 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 aacctctcagtgtcacaggggggcacctcatagagaaaatcagagtggggccaggggtgg 380
Query: 180 ggttccctttagagttgatgtatacagcaacaggcttgacagtcccaggatctgaagccc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ggttccctttagagttgatgtatacagcaacaggcttgacagtcccaggatctggagccc 440
Query: 240 caagctagtagtcactgtatagatggcgaaagctgggtcagatgcatcacaaaacaccca 299
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagctagtagtcactgcagagatggcgaaagctgggtcagatgcatcacaaaacaccca 500
Query: 300 aaccatagccagtgcccatcagccagctctgagccccagagccttcctctttcccttagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccatagccagtgcccatcagccagctctgagccccagagccttcctctttcccttagc 560
Query: 360 ctaaggatccagaacgaattcaaatgaagatcggaggaaaagcatcagggcagtgttgag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaaggatccagaacgaattcaaatgaagatcggaggaaaagcatcagggcagtgttgag 620
Query: 420 ttatgagat-ccaagagtttcatcacccttgctggggacccttgctgaacctcagaaggg 478
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatgagatacca-gagtttcatcacccttgctggggacccttgctgaacctcagaaggg 679
Query: 479 aaaccacagaggcaactggaagagatcctgttccccagaggaactggaaggaagcagccc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaccacagaggcaactggaagagatcctgttccccagaggaactggaaggaagcagccc 739
Query: 539 ta 540
||
Sbjct: 740 ta 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_d12.g1 MSMg01no373_d12.g1 CHROMAT_FILE:
MSMg01no373_d12.g1 PHD_FILE: MSMg01no373_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:08 2005
(243 letters)
>mm_chr11_79238825_79239467
Length = 643
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%)
Strand = Plus / Minus
Query: 1 ctggaattggctttcttagcaatgttttagaggttactcataatttaaatgtattttggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctggaattggctttcttagcaatgttttagaggttactcataatttaaatgtattttggc 384
Query: 61 ctttcagttcaaatagattagtggaataatttcaaagcgtttcattaaaaatacttacac 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ctttcagttcaaatagattagtggaataatttcaaagcatttcattaaaaatacttacac 324
Query: 121 aaagcaaaagctttgggtctgcatgaatcagtttcaccatggacaaaagaagacatttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaagcaaaagctttgggtctgcatgaatcagtttcaccatggacaaaagaagacatttgt 264
Query: 181 agttccttgtctctaggtctgtaggcttttctttaaatttaaggcttgttaccttttctt 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agctccttgtctctaggtctgtaggcttttctttaaatttaaggcttgttaccttttctt 204
Query: 241 taa 243
|||
Sbjct: 203 taa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
