Query= MSMg01no373_o18.b1 MSMg01no373_o18.b1 CHROMAT_FILE:
MSMg01no373_o18.b1 PHD_FILE: MSMg01no373_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:59 2005
(475 letters)
>mm_chr11_83932542_83933416
Length = 875
Score = 837 bits (433), Expect = 0.0
Identities = 467/483 (96%), Gaps = 9/483 (1%)
Strand = Plus / Plus
Query: 1 ggggtgcaggcactgccaaccaaagcctaaggttcaaacccaggcctaggctctggctct 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggggcgcaggcactgccaaccaaagcctaaggttcaaacccaggcctaggctctggctct 260
Query: 61 agctcagactccaaaaggtgcccaggaccctgtgaaggccccacaaaaggttcctgccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctcagactccaaaaggtgcccaggaccctgtgaaggccccacaaaaggttcctgccaa 320
Query: 121 tgtgaagacagctggagtgctgggatatagcaagtacacaccatctgcagatgaccagtg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgaagacagctggagtgctgggacatagcaagtacacaccatctgcagatgaccagtg 380
Query: 181 tcctatgctgtttttacacataaacttgagcaaggaaaaaaaaaacacaaaaagtaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctatgctgtttttacacataaacttgagcaaggaaaaaaaaaacacaaaaagtaaata 440
Query: 241 aaacaatacaatatttatggtttgaagatgctctgatttgtttgtttgtttgtt------ 294
||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaatacaagacagatggtttgaagatgctctgatttgtttgtttgtttgtttgtttg 500
Query: 295 --gacaaacaaacataagacattatttgaggcaagaactcaagtacttcaagtagtccag 352
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ttgacaaacaaacataagacattatttgaggtaagaactcaagtacttcaagtagtccag 560
Query: 353 actggctttgaagtcctcctgttcctctctctctttccaagttctgaaattacaggcctt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actggctttgaagtcctcctgttcctctctctctttccaagttctgaaattacaggcctt 620
Query: 413 tactgccactaccaacctgatggatatactggagtctttttttttttttttttttttttc 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 tactgccactaccaacctgatggatatactggagtctttttttttttttttttttttt-c 679
Query: 473 cga 475
|||
Sbjct: 680 cga 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_o18.g1 MSMg01no373_o18.g1 CHROMAT_FILE:
MSMg01no373_o18.g1 PHD_FILE: MSMg01no373_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:59 2005
(246 letters)
>mm_chr11_84001181_84001826
Length = 646
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%)
Strand = Plus / Minus
Query: 1 tccagcccagaaaagacaggaaagaaatccctagcgtgatagtgacgagggggccaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tccagcccagaaaagacaggaaagaaatccctagcgtgatagtgacgagggggccaggat 387
Query: 61 gaccatgaagtgccagatgcaagaggcaagcgatttaggctggagtcagccaggagtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaccatgaagtgccagatgcaagaggcaagcgatttaggctggagtcagccaggagtctg 327
Query: 121 agcgatattttatagatgaaaattaatgtactatttggctcctaccagtgtcctgagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agcgatattttatagatgaaaattaatgtactatttggctcctaccagtgtcctgagaaa 267
Query: 181 gtgatacactcacagaaagctaccaacagaaatgaagaccattattaccttcaaagtaat 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtggtacactcacagaaagctaccaacagaaatgaagaccattattaccttcaaagtaat 207
Query: 241 aactgt 246
||||||
Sbjct: 206 aactgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
