BAC Information

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BAC

Clone NameMSMg01-374B07
Chromosome11 (Build37)
Map Location 50,111,974 - 50,112,549
singlet/doubletsinglet
Overlap geneCanx
Upstream geneOlfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1
Downstream gene1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374B07.T7 (MSMg01no374_b07.b1)MSMg01-374B07.TJ (MSMg01no374_b07.g1)
ACCAG479960AG479961
length782772
length of high quality
(start - end)		579 (45 - 623)529 (58 - 586)
definitionCHROMAT_FILE: MSMg01no374_b07.b1 PHD_FILE: MSMg01no374_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:11 2005CHROMAT_FILE: MSMg01no374_b07.g1 PHD_FILE: MSMg01no374_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAAAAATTTCCTAAAACTGACTCAGAAGGAAACTCCAGAATGAT
TTTGTTTTCTTGAGAGAAAAACCAGAGAAGGCATGTATGGTGGCTTATAT
ACGCTTGGCCCAGGGAGTGGCACTATTAGGAGGTGTGGCCTTGGAGTGGG
TTTGTCACTGTGGGTGTGGCTTTAAGACCCTAGTCCTAGCTGCCTAGAAG
CCAGTATTCTGCTAGCAGCCTTCAGATGAAAATGTAGAACTCTCAGTTCC
TCCTGCACCATGCCTGCCTGGATGCTGCCATGCTCCTGCCTTGATGATAA
TGGACTGAACCTCTGAGCCTGTAAGCCAGCCCCCAATTAAATGGTGTCCT
TATAAGAGTTGCCTTGTTCGTGATGTCTATTCGCAGCAGTAAAACCCTAA
GACAGCAGGCAAGTCAGAGGTCTCAGCAGCTGCCTAGGAGAAGATGGGCC
AGGAGCAAAAGCATGCTTTCCTGGAGAGGCCAGAAGAGGACATCAGATCA
CCAGAACTGACAGTTGTATCTGTCATGTGGGTGCTGGGAACCAAACTCAG
GTCCTCTGCAAGCAGGGTGCTCACTGTAACCTCTGAGACTCCTCTCCAGC
CTCTGTTTGCCTTGATATTCATATGTGATGTTAGGGATGAGCCCCATTTC
CCTCCTTTACTGTGAGAAATCCATTTTCCCACACCCTTTGTTGTTCATAA
AACCTTTTCCCCCCCCCATAACCTTGGATCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGGACAGCTAGGGAGACACAGAGGAACCTTGTCTCGAAAAAC
CAAGTTAAAAGAAAACAAAACAAAAAATAGAAATTAGGGGGAAAAAAAAT
CCCCCGCTTTACTGCTTTTATCATCATGAAGTTTCACCTGCATAGGTGCA
AACTGTGGCTTGTAATAACTGCAAAAAGTTCCTTACTCAGGAAACAGAAG
AATTATCTTTCTGCCAGTTTTCTGGCCATCCAAATCGCAACTCAACAACA
CCATTAGTTATTTGAAAATTCCACACAATTCCAACCAAGATTCAGCATTT
TCAGTGCATTAAAACATACTTAAGCCAGGTAGGTCCCTGTGAGTTTGAGC
CCTCCCAGTCTACAGAGCAAGTTCTAAGACAGCTAGGGCTACACAGAAAA
ACTGTCTTGAAGACAAAATAAAATAAAATAAAATGATAAACAGATACAAA
TATACACATACATATAACAGGATTGGAAAGCCAGAATAGGAGTCTAACAA
TTATATATTTTGACACTGAATAAGTAAAAAGATAAACACTAAAAATCTGC
TTTTTATAAAGTAATCAGTCTCCCCCAAAAGTGGATATAATCCCCCAATT
AATGAACAATCCCTAAACCTCCGCAGCCCCATTCAGAAGCTTTCTTTCAG
GCCCCACCCCATCTTTGGGCCAATCATTTACATATATCTTTGGGTAACAA
TAAAATGAAGAAGTGGGCGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_b07.g1 MSMg01no374_b07.g1 CHROMAT_FILE:
MSMg01no374_b07.g1 PHD_FILE: MSMg01no374_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:11 2005
         (529 letters)



>mm_chr11_50111821_50112749
          Length = 929

 Score =  924 bits (478), Expect = 0.0
 Identities = 529/576 (91%), Gaps = 47/576 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagctagggagacacagaggaaccttgtctcgaaaaaccaagttaaaagaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 caggacagctagggagacacagaggaaccttgtctcgaaaaaccaagttaaaagaaaaca 213

                                                                       
Query: 61  aaacaaaaaatagaaattaggggg-aaaaaaaatcccccgctttactgcttttatcatca 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 214 aaacaaaaaatagaaattagggggaaaaaaaaatcccccgctttactgcttttatcatca 273

                                                                       
Query: 120 tgaagtttcacctgcataggtgcaaactgtggcttgtaataactgcaaaaagttccttac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgaagtttcacctgcataggtgcaaactgtggcttgtaataactgcaaaaagttccttac 333

                                                                       
Query: 180 tcaggaaacagaagaattatctttctgccagttttctggccatccaaatcgcaactcaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcaggaaacagaagaattatctttctgccagttttctggccatccaaatcgcaactcaac 393

                                                                       
Query: 240 aacaccattagttatttgaaaattccacacaattccaaccaagattcagcattttcagtg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aacaccattagttatttgaaaattccacacaattccaaccaagattcagcattttcagtg 453

                                                                       
Query: 300 cattaaaacatacttaagccaggt------------------------------------ 323
           ||||||||||||||||||||||||                                    
Sbjct: 454 cattaaaacatacttaagccaggtgcaataacacataactttaattgaaacactggaggc 513

                                                                       
Query: 324 ----------aggtccctgtgagtttgagccctcccagtctacagagcaagttctaagac 373
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agaggcaggtaggtccctgtgagtttgagccctcccagtctacagagcaagttctaagac 573

                                                                       
Query: 374 agctagggctacacagaaaaactgtcttgaagacaaaataaaataaaataaaatgataaa 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agctagggctacacagaaaaactgtcttgaagacaaaataaaataaaataaaatgataaa 633

                                                                       
Query: 434 cagatacaaatatacacatacatataacaggattggaaagccagaataggagtctaacaa 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cagatacaaatatacacatacatataacaggattggaaagccagaataggagtctaacaa 693

                                               
Query: 494 ttatatattttgacactgaataagtaaaaagataaa 529
           ||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttatatattttgacactgaataagtaaaaagataaa 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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