Query= MSMg01no374_n02.b1 MSMg01no374_n02.b1 CHROMAT_FILE:
MSMg01no374_n02.b1 PHD_FILE: MSMg01no374_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:11 2005
(540 letters)
>mm_chr11_9146455_9147394
Length = 940
Score = 924 bits (478), Expect = 0.0
Identities = 518/536 (96%), Gaps = 8/536 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaagccaacctgtgtatttctcactcatataattcataatggttgttaagtgat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagccaacctgtgtatttctcactcatataattcataatggttgttaagtgat 264
Query: 65 ttagaagagtgtatcagacttatccttcgatacttacacttccagtctgccctcgtcctc 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 265 ttagaagagtgtatcagacttatcctttgatacttacacttccagtctgcccttgtcctc 324
Query: 125 aacactgggttagctggcaggtctctggtaggaggagtggatgacaaggcaggtacccag 184
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 aacactgggttaactggcgggtctctggtaggaggagtggataacaaggcaggtacccag 384
Query: 185 cagcttctgccatccctgtgtgggagttggctggaggaggcacccaagagccactagtga 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 cagcttctgccatccctgtgtgggagttggctggaggaggcacccaagagtcactagtga 444
Query: 245 ccacgtttcctacctgttctgtgcctcactctggcctttcttcagggttgtatttctagg 304
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccacgtttcctacctgttttgttcctcactctggcctttcttcagggttgtatttctagg 504
Query: 305 accctgtatttacctttttagggtaaataagaacctctcagaaacatatattattattca 364
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accctgt--------ttttagggtaaataagaacctctcagaaacatatattattattca 556
Query: 365 cctatttttcaagagttagaattgacttagtttttctctgctcataaaatatcaaatgtc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cctatttttcaagagttagaattgacttagtttttctctgctcataaaatatcaaatgtc 616
Query: 425 ttatatattatcttgtaggagaaacattgttcaatgctaaaataaaactaaaagcaaatg 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 617 ttatatattatcttgtaggagaaacattgttcaatgctaaaataaaactaaaagcaaacg 676
Query: 485 aacgagattataaatctaatctacttaaaagaaataagctgtgtacataaactaaa 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 677 aacgagattataaatctaatctacttaaaacaaataagctgtgtacataaactaaa 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_n02.g1 MSMg01no374_n02.g1 CHROMAT_FILE:
MSMg01no374_n02.g1 PHD_FILE: MSMg01no374_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:11 2005
(557 letters)
>mm_chr11_9189880_9190836
Length = 957
Score = 986 bits (510), Expect = 0.0
Identities = 546/558 (97%), Gaps = 2/558 (0%)
Strand = Plus / Minus
Query: 1 atttcaagaagtattaattctaaaaagttcaaaatatttttagatcccttcttcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 atttcaagaagtattaattctaaaaagttcaaaatatttttagatcccttcttcatccaa 698
Query: 61 tgatttttaagtctttgaattttttcagtgaccagatgatcaaattccagaagctcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgatttttaagtctttgaattttttcagtgaccagatgatcaaattccagaagctcctga 638
Query: 121 ggagcagcatcatgggagtctgcctttaaacgctttaaatgagttagccatgaaacagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggagcagcatcatgggagtctgcctttaaacgctttaaatgagttagccatgaaacagtt 578
Query: 181 gcattgaaaacaagctcagtgagagaagacagattatcaaattcaggagcagggaatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gcattgaaaacaagctcagtgagagaagacagattatcaaattcaggagcagggaatgag 518
Query: 241 ccagaaggattaaatagtaatttctccacaaactccacaaacgacaggagaatgttcatc 300
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 517 ccagagggattagatagtaatttctccacaaactccacaaacgacagaagaatgttcatc 458
Query: 301 tgtccattttcaaggatgtgcaactttttg-tccaccactaaaaggtgctttgtgaaact 359
||||||||||||||| |||||||| || || ||||||||||||||||||||||||||| |
Sbjct: 457 tgtccattttcaagggtgtgcaac-ttctgatccaccactaaaaggtgctttgtgaaatt 399
Query: 360 gaaggccctacgatacagatagaatggttttattatcagaaagaaaaattaactcaatgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaaggccctacgatacagatagaatggttttattatcagaaagaaaaattaactcaatgc 339
Query: 420 ctcaaatttctaagatctttacagacatgtaatgatttatagtggtccaaacaaaagatt 479
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctcaaattgctaagatcattacagacatgtaatgatttatagtggtccaaacaaaagatt 279
Query: 480 ttctagacaatacagtttttacttaatgtcaaactaacatgagcatctattactatgtta 539
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 278 ttctagacaatacagtttttacttaatgtctaactaacatgagcatctattactttgtta 219
Query: 540 gaaatcccaacatgactg 557
||||||||||||||||||
Sbjct: 218 gaaatcccaacatgactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
