Query= MSMg01no375_e04.b1 MSMg01no375_e04.b1 CHROMAT_FILE:
MSMg01no375_e04.b1 PHD_FILE: MSMg01no375_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:48 2005
(501 letters)
>mm_chr11_42856940_42857840
Length = 901
Score = 911 bits (471), Expect = 0.0
Identities = 488/495 (98%), Gaps = 3/495 (0%)
Strand = Plus / Minus
Query: 7 gaattctcaaatctaatgtgacaatattagagaagaaaatagtactttgtgagaaagatg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattctcaaatctaatgtgacaatattagagaagaaaatagtactttgtgagaaagatg 505
Query: 67 gggatttctaatccaacaaatctggaattttgtcattgtaaaatggctgatgtggcaatt 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 gggatttctaatccaacaaatctggaattttgtcattgtaaaatggctgatgtggcaaat 445
Query: 127 tcatcatagtccttataaggacaaacctggcgcatgcattgctaagttatcttaaagttg 186
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 tcatcatagtccttataaggacaaacctggtgcatgcattgctaagttatcttaaagttg 385
Query: 187 acaggggatcctgtaccatggcataaccctggtgacctcaaatgcatggggaagatttac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaggggatcctgtaccatggcataaccctggtgacctcaaatgcatggggaagatttac 325
Query: 247 cttcaatattctagttttagtagttatttgttcctccaagaccctgaaatgttatatgta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 cttcaatattctagttttagtagttatttgttcctccaagaccctgaaatgttatattta 265
Query: 307 atcattgactgatccttaaaaaacattcccttttctttctttttaaaaaatatattactt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcattgactgatccttaaaaaacattcccttttctttctttttaaaaaatatattactt 205
Query: 367 cttttattggatattttcatgtacatttcaaatgttatctcctttcctgcccgccccccc 426
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 204 cttttattggatattttcatgtacatttcaaatgttatctcctttcctgccc---cccac 148
Query: 427 cccagcttcccagaaactccctattctatccttcttccccctgcttctatgagggtgttc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cccagcttcccagaaactccctattctatccttcttccccctgcttctatgagggtgttc 88
Query: 487 ctccacccacccacc 501
|||||||||||||||
Sbjct: 87 ctccacccacccacc 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_e04.g1 MSMg01no375_e04.g1 CHROMAT_FILE:
MSMg01no375_e04.g1 PHD_FILE: MSMg01no375_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:48 2005
(520 letters)
>mm_chr11_42712024_42712943
Length = 920
Score = 978 bits (506), Expect = 0.0
Identities = 512/514 (99%)
Strand = Plus / Plus
Query: 4 atgatatcaattaaaattgttctacttggcaaagttctctgttggctgtctccttattgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 atgatatcaattaaaattgttctacttggcaaagttctctgttggctgtctccttattgt 263
Query: 64 ttaaactgtcaaataacaaatttcctttcaagtttgaaaatactaaatttcagcctgggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaaactgtcaaataacaaatttcctttcaagtttgaaaatactaaatttcagcctgggc 323
Query: 124 aattatattttgaattttggtctacttttattgttgtggttttgatactcaatgcaagac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattatattttgaattttggtctacttttattgttgtggttttgatactcaatgcaagac 383
Query: 184 actaattcaaaacaatgaccttctgtgacatctatgtgtcaccaggctgtgacataggat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actaattcaaaacaatgaccttctgtgacatctatgtgtcaccaggctgtgacataggat 443
Query: 244 gtggtatctaaggaaatgtatgaaatcttatattcaagaaactacttaggaagacaatac 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgggatctaaggaaatgtatgaaatcttatattcaagaaactacttaggaagacaatac 503
Query: 304 acatgtaagcatttaatctcctccatgcatgcaaacatagtcatcaaataactaaataag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acatgtaagcatttaatctcctccatgcatgcaaacatagtcatcaaataactaaataag 563
Query: 364 aatgtaaaatttaagtggcaaaattttatccaatataattacatggcaagaataagagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatgtaaaatttaagtggcaaaattttatccaatataattacatggcaagaataagagaa 623
Query: 424 atgtgcacagaaaattaacacttgatcaaggaaatttgaggaaacaagatgagcttctgg 483
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 atgtgcacagaaaattaacacttgatcagggaaatttgaggaaacaagatgagcttctgg 683
Query: 484 ggactgtgaagactgtatggaaatgtatgtatag 517
||||||||||||||||||||||||||||||||||
Sbjct: 684 ggactgtgaagactgtatggaaatgtatgtatag 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
