Query= MSMg01no375_m10.b1 MSMg01no375_m10.b1 CHROMAT_FILE:
MSMg01no375_m10.b1 PHD_FILE: MSMg01no375_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:28 2005
(469 letters)
>mm_chr11_108380231_108381103
Length = 873
Score = 816 bits (422), Expect = 0.0
Identities = 460/474 (97%), Gaps = 5/474 (1%)
Strand = Plus / Minus
Query: 1 gtgctttaggagagcgtcaagcagaact---tgctaagtgctgtgtgggctaagaaacag 57
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 555 gtgctttaggagagcgtcaagcagaccttgctgctaagtgctgtgtgggctaagaaacag 496
Query: 58 tg-tttcagcaccctagacagcatagtgtgttttgacgtctggtggattccagaacagga 116
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgttttcagcaccctagacagcatagtgtgttttgacgtctggtggattccagaacagga 436
Query: 117 tgaaggggctaatctcaaatggaaacaactggctgatgcatctttgccatgctgcacact 176
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 435 tgaaggggctaatctcaaatggaaacaactggctgatgcatcgctgccatgctgcacact 376
Query: 177 tgtgcagatgtgcctacctactcgtacaataccttagaagttgaaagtgcatgctcttgt 236
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgtgcagatgtggctacctactcgtacaataccttagaagttgaaagtgcatgctcttgt 316
Query: 237 ctcaggagatttatgtcagagtcatatttagtttttaataatttcacattttgttcatag 296
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 315 ctcaggagatttatgtcagaatcatatttagtttttaataatttcacattttgctcatag 256
Query: 297 tcatttacaagatgttctttctctttatgtagtatgttgcgcctgaaacagtaagat-aa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 255 tcatttacaagatgttctttctctttatgtagtatgttgcgcctgaaacagtaagataaa 196
Query: 356 aaatattatatatttttggaaccaatctctaaaatggatatcaactaaactaataatcaa 415
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 195 aaatattatatatttttggaaccaatctctaaaatggatagcaactgaactaataatcaa 136
Query: 416 ctaaatttaaatatattctctttttatatatgaagtaagtatccgcattttcat 469
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 135 ctaaatttaaatatattctcattttatatatgaagtaagtatccgcattttcat 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 873
Length adjustment: 10
Effective length of query: 459
Effective length of database: 863
Effective search space: 396117
Effective search space used: 396117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_m10.g1 MSMg01no375_m10.g1 CHROMAT_FILE:
MSMg01no375_m10.g1 PHD_FILE: MSMg01no375_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:28 2005
(419 letters)
>mm_chr11_108245661_108246480
Length = 820
Score = 677 bits (350), Expect = 0.0
Identities = 399/420 (95%), Gaps = 15/420 (3%)
Strand = Plus / Plus
Query: 1 cagaaagaaggggatagaaaggagcctcactttagcaatagagagatgtatatgacaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaagaaggggatagaaaggagcctcactttagcaatagagagatgtatatgacaaat 260
Query: 61 gcaaggacttgtacatgacataggtaaacac-tggcatgctggggctgtggatcttgacc 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gcaaggacttgtacatgacataggtaaacacttggcatgctggggctgtggatcttgacc 320
Query: 120 ctcacagaaaatgggttctttaaaaaaaaaaaaaaaaagactgtattatcagtagctatc 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ctcacagaaaatgggttcttt-------aaaaaaaaaagactgtattatcagtagctatc 373
Query: 180 tccactgtcctagacaaagaccccaggtcttgatggttttttttgtttgtttgtt-tttt 238
|||||||||||||||||||||||| ||||||||| |||||| || ||||||| || ||||
Sbjct: 374 tccactgtcctagacaaagaccccgggtcttgat-gtttttgtt-tttgttt-ttgtttt 430
Query: 239 ttttttttt-aataattgagagactaacatacaataaagtttaagaatggttgcttaaga 297
||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 431 tttttttttaaagaattgagagactaacatacaatgaaggttaagaatggttgcttaaga 490
Query: 298 tacatagagatggtttaacacagatacattttccaggaaattttatttatgaacagagga 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tacgtagagatggtttaacacagatacattttccaggaaattttatttatgaacagagga 550
Query: 358 tcccggtaaacacatgaagctgcttctgtcacatgtgtatgtgtgtgtttatatgtgtgc 417
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 551 tcccggtaaacacatgaagctgcttctgtcacatgtgtatgtgtgt--ttatatgtgtgc 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 820
Length adjustment: 9
Effective length of query: 410
Effective length of database: 811
Effective search space: 332510
Effective search space used: 332510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
