BAC Information

Click to search

BAC

Clone NameMSMg01-375O06
Chromosome11 (Build37)
Map Location 106,688,121 - 106,688,546
singlet/doubletsinglet
Overlap geneSmurf2
Upstream geneTanc2, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45
Downstream geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375O06.T7 (MSMg01no375_o06.b1)MSMg01-375O06.TJ (MSMg01no375_o06.g1)
ACCAG481337AG481338
length763777
length of high quality
(start - end)
426 (75 - 500)385 (81 - 465)
definitionCHROMAT_FILE: MSMg01no375_o06.b1 PHD_FILE: MSMg01no375_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:37 2005CHROMAT_FILE: MSMg01no375_o06.g1 PHD_FILE: MSMg01no375_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGACCATTATCAATGCTTTGTAAATCCTGTTTGTCAGAA
GAGTGCCTGTTATAGTGCAAACTCTTGATTCACAACATAAACGAGGTCGT
ATATCTCAGGTCCACTCCACCCTAGCCATTTAGCTTTAGGTTCCCCTCCT
CCTGCCTTGTCTTTGGCCATTTCATTATTCTGTCACAAAAGAAACGGGGG
ATAGTACAGAGTCAACTGATTGTTTGCAAACATCTATTAAAGAGACCAGC
AGGCCTGGAGAGACAGGTGGCTCAGTGGTTAAAAGCACTTGCTGCTCTTC
CAAGGGAACTGAATTTACCATGTTGGGTGGCTACAACCATCTGTAACCCC
AGGTCCAGGGATCTAAAACCTCTGGCCTCCCTGGTTATCTGCACTCACAT
ACACATACCCACATGCAGACACATGCATTTATACATAATTTAAAAATAAT
AAAAATAATAGATTTTTAATAAGACAAGGAAGAAAAAGTCATTAACACTA
ATAAAGAAAATCATTTAAAAATGATCTATACTCTTCCAGTAGTTGTCACT
TTCTCCGCCCCGGATAAACTGTAAACTAAAATCTTTTTATGTACTTACTC
CTTTTCGGACCACGGATTTGCTAAGGTCACCCTAGTTCGACCTTTTAATT
TTTTCATTCTCCGGGGTCTTAACCCCCAATGGGTGTATTATTAGCCTCTT
TTTCCCCCCCCTT
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGTAGACCAGGCTTGC
TTTGAAGTCAAAGATCTACCAGCCTCTGCCTCCACAGTGCTGGGATTGAG
GAGTGTTGCCATGGCTGTCTGGCCCTAGTGATTAAAATAAAAATAAAAAA
TGTTTAGTTTTATTTATATGTTTGGAGTTGAGGTACATTTGCCACAGGCA
TGCAGGTTCCCCCAGGCACCAGAAGGGAGCATCGGTTTCTGGAGCTGGAG
TTACAGTTGGTAGTTTTGAACTACCCCTTGGTGATGCTGATGCTGATGCT
GGTGCTGATGCTGATGCTGGTGCTGATGCTGGTGCTGATGCTGGTGGTGG
TGCTGGTGCTGGTGCTGATGCTGGCGCTGATGCTGGTGGCGCTGCTGATG
CTGCTGCTGATGCTGGTGGTGCTGCTGATGATGCCGCTGATGCTGTTGTT
GTCGCTGATGTTTATGCTGTTGTTTATTCTTGTCGTCCCCCTTTCCTCTT
CCTTTTTTTTATTCCTCCTCCTTTTATTCTTTTATTTTTATTTACCCTTA
TTCTTTTTTCCTCTTCTCTTTTATTTACCTTTTCCCCCTCTTTTTTTTTC
TTCTCTTTTTTCCCTTTCCTACTTTATCCTCTTCCCTATTTTCCCATCCT
TTTCTTTCCCCTCTTCCCTTTCCCTTCTTTTTCTCTTTTCCCCCATATTT
CCTCTCCTATTTCTCTATCCTCACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_o06.b1 MSMg01no375_o06.b1 CHROMAT_FILE:
MSMg01no375_o06.b1 PHD_FILE: MSMg01no375_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:37 2005
         (426 letters)



>mm_chr11_106687921_106688746
          Length = 826

 Score =  808 bits (418), Expect = 0.0
 Identities = 424/426 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctttgtaaatcctgtttgtcagaagagtgcctgttatagtgcaaactcttgattcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctttgtaaatcctgtttgtcagaagagtgcctgttatagtgcaaactcttgattcaca 260

                                                                       
Query: 61  acataaacgaggtcgtatatctcaggtccactccaccctagccatttagctttaggttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acataaacgaggtcgtatatctcaggtccactccaccctagccatttagctttaggttcc 320

                                                                       
Query: 121 cctcctcctgccttgtctttggccatttcattattctgtcacaaaagaaacgggggatag 180
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 cttcctcctgccttgtctttggccatttcattattctgtcacaaaaggaacgggggatag 380

                                                                       
Query: 181 tacagagtcaactgattgtttgcaaacatctattaaagagaccagcaggcctggagagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacagagtcaactgattgtttgcaaacatctattaaagagaccagcaggcctggagagac 440

                                                                       
Query: 241 aggtggctcagtggttaaaagcacttgctgctcttccaagggaactgaatttaccatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtggctcagtggttaaaagcacttgctgctcttccaagggaactgaatttaccatgtt 500

                                                                       
Query: 301 gggtggctacaaccatctgtaaccccaggtccagggatctaaaacctctggcctccctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtggctacaaccatctgtaaccccaggtccagggatctaaaacctctggcctccctgg 560

                                                                       
Query: 361 ttatctgcactcacatacacatacccacatgcagacacatgcatttatacataatttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatctgcactcacatacacatacccacatgcagacacatgcatttatacataatttaaa 620

                 
Query: 421 aataat 426
           ||||||
Sbjct: 621 aataat 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)