BAC Information

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BAC

Clone NameMSMg01-376A20
Chromosome11 (Build37)
Map Location 33,122,538 - 33,122,997
singlet/doubletsinglet
Overlap geneRanbp17
Upstream geneMpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3
Downstream geneLOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1, Kcnmb1, Lcp2, Foxi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376A20.T7 (MSMg01no376_a20.b1)MSMg01-376A20.TJ (MSMg01no376_a20.g1)
ACCAG481461AG481462
length770760
length of high quality
(start - end)		473 (44 - 516)465 (72 - 536)
definitionCHROMAT_FILE: MSMg01no376_a20.b1 PHD_FILE: MSMg01no376_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:51 2005CHROMAT_FILE: MSMg01no376_a20.g1 PHD_FILE: MSMg01no376_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCCTTGGTCACAGCTTTCTCAGCAGCAGCCTGCTCCTCCTTCTCAG
TCTCCTCTGGGTCTCTGTAGAAGTAAAGATCAGGCATAACCTCCCATGGG
TGCTCACGGGAGATAGTACCTCGCATGCAGAGTACTTCCCTGGCCAGCAT
CCACCACATCAGACCCACTGAGTGAGCTCCCTTGTTGTTGCATGGGATGG
CAATGTCCACATAGCGCAGGGGAGAATCTGTGTTACACAGAGCAATGGTG
GGCAGGTTGACATAAGAGGCCTCTGTGAGGGGCTGGTGGTCAGCCCTGGG
ATCGGTCACCACTAGAAGCTGTGGCTCCCTGAAGGCTGCTTAGATCTGGT
TTAGTGAAGATCCCAGGTGTGAAGCGGCCAGCGATTGGAGTGGCTCCCGT
GGCAGCAGCAAACTTAAGCACAGGTCCCTGGCCTGTGTTCCTGGAGGAGA
TGACGATGACGTCAGCAGGATTCTCGATGGCAACAATAGCTCGAGCTGCG
AGCAGCAGCTTCTCCCGGGTCCTCTTTCAGGTTATGATGGAAATACCGTC
CCTTTCCTTTTGGAAAAGGACTGCTCCCTCTGAAAACCAAGGTGGTGGCC
CCTAAAGGGTTTCCCCAACAAGGAATTTAGGCACCCCCTCTCCTCCTTTG
AAGGGGCCAGGGGTCCCGAAATTTGGAAACTTCCTTTATTTATTTGCGGA
CTCACACACCACAAGGGGTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAAACAAGGTCCTTTGAAGTAACAGGTC
TATGTTAAGACATTGAAGCATTCTGTGTGTGGGCCATAGATTAAACCACA
GCTCAGTTTTCTGCATAGTGCTCTCCATCTTAAAGTGCTCGCTGCCTTAG
CAGGAAAGTGCCCAATGTAAGCTAGGACTTGGCTTATTTTACTTCAGCAA
ACTGCAGAGCAGGCGCATGTGACATGAGGGTGTCCTAGTAACTGCTTTAT
GTGGCCCAGGGCTTCAGGTGGGGTCTGCTCTGCTCTGCTCTTCACTTGTA
TCTCACACCTTTGTCAAAAGCATGATCAGAAGTCACACACTGTCACTTTC
TCCTTCTAGGTCACACTTCTGGGTGGTTTTTGTGCTTAGATGTGTTTGCT
TGCATGGTTGCACTGTCACACTATCACTTAAACCCATGCTTTCTAGGCTG
CCTCCTGCTAANCTGATTTCTGGGACTACAACTCCACATGACGTTAGACA
ACTTTGAGGAAAAAATAGGCATCTCGTTTACCTGTCAAACCTAAGTGTGG
AGTGGGATATCTTCCCTGGGCCCAGGAATTTTCCTGGCTTAGGCCCCCCA
AAGTTTATGTTTCCTTATAATCCCCTTGTGCCTAATCGCAACTGCGGTGG
AAGGACCCAGTAATACTTCTATTTTTGCCCCAAATTTTTTCTTTCTCCCT
ATTTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_a20.g1 MSMg01no376_a20.g1 CHROMAT_FILE:
MSMg01no376_a20.g1 PHD_FILE: MSMg01no376_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:51 2005
         (465 letters)



>mm_chr11_33122338_33123197
          Length = 860

 Score =  839 bits (434), Expect = 0.0
 Identities = 455/465 (97%), Gaps = 5/465 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaacaaggtcctttgaagtaacaggtctatgttaagacattgaagcattctgtgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaaaacaaggtcctttgaagtaacaggtctatgttaagacattgaagcattctgtgtgtg 601

                                                                       
Query: 61  ggccatagattaaaccacagctcagttttctgcatagtgctctccatcttaaagtgctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggccatagattaaaccacagctcagttttctgcatagtgctctccatcttaaagtgctcg 541

                                                                       
Query: 121 ctgccttagcaggaaagtgcccaatgtaagctaggacttggcttattttacttcagcaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 540 ctgccttagcaggaaagtgcccaatgtaagctaggacttggcttattttacttccgcaaa 481

                                                                       
Query: 181 ctgcagagcaggcgcatgtgacatgagggtgtcctagtaactgctttatgtggcccaggg 240
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 480 ctgcagagcaggcacatgtgacatgagggtgtcctagtaactgctctatgtggcccaggg 421

                                                                       
Query: 241 cttcaggtggggtctgctctgctctgctcttcacttgtatctcacacctttgtcaaaagc 300
           |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||
Sbjct: 420 cttcaggtggggtctgctctgctctgc-----acttgtatctcacacctttgtcaaaagc 366

                                                                       
Query: 301 atgatcagaagtcacacactgtcactttctccttctaggtcacacttctgggtggttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atgatcagaagtcacacactgtcactttctccttctaggtcacacttctgggtggttttt 306

                                                                       
Query: 361 gtgcttagatgtgtttgcttgcatggttgcactgtcacactatcacttaaacccatgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtgcttagatgtgtttgcttgcatggttgcactgtcacactatcacttaaacccatgctt 246

                                                        
Query: 421 tctaggctgcctcctgctaanctgatttctgggactacaactcca 465
           ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 245 tctgggctgcctcctgctaagctgatttctgggactacaactcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 860
Length adjustment: 10
Effective length of query: 455
Effective length of database: 850
Effective search space:   386750
Effective search space used:   386750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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