Query= MSMg01no376_f22.b1 MSMg01no376_f22.b1 CHROMAT_FILE:
MSMg01no376_f22.b1 PHD_FILE: MSMg01no376_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:15 2005
(421 letters)
>mm_chr11_109458680_109459499
Length = 820
Score = 576 bits (298), Expect = e-169
Identities = 329/340 (96%), Gaps = 3/340 (0%)
Strand = Plus / Minus
Query: 83 ggaatggagggctgggagggatat-cttcatgggcactgtggactgtggggagtaaggtc 141
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 620 ggaatggagggctgggagggatatccttcatgggcactgtggactgtggggagtgtggtc 561
Query: 142 tagagaagagcgggaggggaaaggacctgggatgggtcatctcaggtaagggtgccaaat 201
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagagaagagtgggaggggaaaggacctgggatgggtcatctcaggtaagggtgccaaat 501
Query: 202 gcttcagaccagatctcagcttttcagaatttgaaatatttacacagactttaccaaatc 261
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 gcttcagaccagatctcagcttttcagaatttgaaatatttacgcagactttaccaaatc 441
Query: 262 tgaaaaaaaaaaaaaattccaagacttcaagcgtcattgctcaaacttcactggagcatg 321
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 tg--aaaaaaaaaaaattccaagacttcgagcgtcattgctcaaacttcactggagcatg 383
Query: 322 ctgggatttttgaattagtggtgtacaatctgcatggagagacagggataaaatctaaga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgggatttttgaattagtggtgtacaatctgcatggagagacagggataaaatctaaga 323
Query: 382 tctggctggtgcagagggtatagagaagcctgggtaagag 421
|||||| | |||||||||| ||||||||||||||||||||
Sbjct: 322 tctggccgatgcagagggtgtagagaagcctgggtaagag 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 820
Length adjustment: 9
Effective length of query: 412
Effective length of database: 811
Effective search space: 334132
Effective search space used: 334132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_f22.g1 MSMg01no376_f22.g1 CHROMAT_FILE:
MSMg01no376_f22.g1 PHD_FILE: MSMg01no376_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:15 2005
(382 letters)
>mm_chr11_109302046_109302828
Length = 783
Score = 642 bits (332), Expect = 0.0
Identities = 368/387 (95%), Gaps = 13/387 (3%)
Strand = Plus / Plus
Query: 8 ccctctctccctgccttccttcctgtttttgtttgagagagggtcccactatgtagcctg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ccctctctccctgccttccttcctgtttttgtttgagagagggtcccactatgtagcctg 255
Query: 68 gactgtcctcaaactcactatgtggctctaaactggtctcaaacttatgctaatcctcct 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gactgtcctcaaactcactatgtggctctaaactggtctcaaacttatgctaatcctcct 315
Query: 128 gccggagcatccctagagctgggattacgggcatttacagccgcttctgattggtagggt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gccggagcatccctagagctgggattacgggcatttacagccgcttctgattggtagggt 375
Query: 188 gtttgtttgtttgtttgttttg-----aaaat-------ccttgggatgtatttctgctt 235
|||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 376 gtttgtttgtttgtttgttttgttttgaaaatgccatttccttgggatgtatttctgctt 435
Query: 236 gggaaaaccgagttgtgaggttacacatgtagagactgtctagtcttaaactctccgtgg 295
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 436 gggaaagccgagttgtgaggttacacatgtagagactgtctagtcttaaactctccatgg 495
Query: 296 aaccaaaa-taaaagcaactgtgaaagatgtgctggagaggtggatcagtggttaggaac 354
|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 496 aaccaaaaataaaagcaactgtggatgatgtgctggagaggtggatcagtggttaggaac 555
Query: 355 cttggctgctctttcagncctacatgg 381
||||||||||||||||| ||||||||
Sbjct: 556 cttggctgctctttcagaactacatgg 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 783
Length adjustment: 9
Effective length of query: 373
Effective length of database: 774
Effective search space: 288702
Effective search space used: 288702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
