BAC Information

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BAC

Clone NameMSMg01-377C01
Chromosome11 (Build37)
Map Location 82,038,686 - 82,178,774
singlet/doubletdoublet
Overlap genenone
Upstream geneAccn1, 1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1
Downstream geneTmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377C01.T7 (MSMg01no377_c01.b1)MSMg01-377C01.TJ (MSMg01no377_c01.g1)
ACCAG482282AG482283
length667782
length of high quality
(start - end)
114 (73 - 186)156 (84 - 239)
definitionCHROMAT_FILE: MSMg01no377_c01.b1 PHD_FILE: MSMg01no377_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:12 2005CHROMAT_FILE: MSMg01no377_c01.g1 PHD_FILE: MSMg01no377_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,038,686 - 82,038,799)(82,178,621 - 82,178,774)
sequence
TTCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGGATTCTGATGTCAGGAAGCCACATGTTCCGCTGGCAA
GCACGACCTCTGTGTCGGTTCAGGGCCACCTTCCCTGGTGATGAGAGTGT
GAAGCCAGAGTCAGGAGGCAGCAAGGGTGGGTAAGCTGGGTGGGAGGAGA
AATAAAAGCAGTAAAACTGGTCGTATCCCATGGAGGAGTATTTGAGATTG
GGGATGTGGAGATAGAATCAGTGCTCAGGTTAGAGAAGGGGGGTTTTAAA
ACAGTGGGCTATTTTTGGACCCCGGTTTAAAGAATCCTCTTCCCTTTGTG
GGGATGTCTCACGTGGAATGTCCCAGGTTTCTTCCCCTAAATAATCCCCT
CTTTTTTCCGTTTCTTTTTTTTCCCCTTGTCTTTTTTCTTATTTAACTCT
TCTTCCCTCTTCCTTTTTTTTGCCGTCTTTTTTTCTTTTCCGTTTTCCCT
TTCCCTTTTTCCCCCTTCTTTCTCTTTTTCTATTTCGCCCCCCCCCCCCC
TCCTCTTTTCCCCTTTTCCTCCTCTTTTTTTCCTTTTTCCCCCCCCCTTT
CTCTTTTCCTTCCCCCTTTCCTCTCTCTCTTCTCCCCCCCTTTTTTTTTC
CCTCCTCTCCTTCCTTT
NNTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTTTGAAGACAGT
CTTACACATCCCAGGCAGACCCCCAACCCTGAAAGTAGCCAAGAATGTCC
TTGATGTTGTGACCCTCTGTCCTCCACGTGGAGAGGGCTGGGACCACAGG
TGTGCCGTTAACAGGTCTGTTTTATGAGGTGACAGGGNATGNNAACCCTG
GGGACTTTNNGTATATATCAAGCAAGCACTCTACCACTGAGCTACACCCT
CAGTGCCCCTTCTGTTAGATTTAAACACTATTATGGGTGACCCAGCACCT
CACTGGATCTTCCNTGCTTTCTAANAAAGGAAAGGGAAAGGGTGGGTTGG
GGGAAATTCCCTTTTCTAAAGGGGAAGGCTAAGGAACCACCCCTCCCCCT
TTGGGTCCCCCCCTCCTNTTGTCTCCCCGATAAGGGGGCTTTCCCGGCAA
ATTTTAAAAAAACCCCCCCTTGGGNTATAAAAACCCCCNNNNNGGGNNNN
NNNNNNNTTGTGTGTTGNNNNTTCTGTTGGTTAGNTGAGNNNNNNNNNNN
NTGTTGAGGGAGAGGCTGGGGTCTTCCAACNNNNNTTTTATTTTCCTTCA
ATACANTCCCTTCGTGGGGTAATACTCTTNTATTTCCCGAGAGTTAACTC
TTGTACCACCANCACTTTTTTACTCCCATTGTGTTTTTCCGCACCTAATG
CCCTCCCCCCCCTTTTCGTCCATCAAATACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_c01.b1 MSMg01no377_c01.b1 CHROMAT_FILE:
MSMg01no377_c01.b1 PHD_FILE: MSMg01no377_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:12 2005
         (114 letters)



>mm_chr11_82038486_82038999
          Length = 514

 Score =  221 bits (114), Expect = 1e-62
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcaggaagccacatgttccgctggcaagcacgacctctgtgtcggttcagggccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcaggaagccacatgttccgctggcaagcacgacctctgtgtcggttcagggccacctt 260

                                                                 
Query: 61  ccctggtgatgagagtgtgaagccagagtcaggaggcagcaagggtgggtaagc 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctggtgatgagagtgtgaagccagagtcaggaggcagcaagggtgggtaagc 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no377_c01.g1 MSMg01no377_c01.g1 CHROMAT_FILE:
MSMg01no377_c01.g1 PHD_FILE: MSMg01no377_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:12 2005
         (156 letters)



>mm_chr11_82178421_82178976
          Length = 556

 Score =  298 bits (154), Expect = 1e-85
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctttgaagacagtcttacacatcccaggcagacccccaaccctgaaagtagccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttctctttgaagacagtcttacacatcccaggcagacccccaaccctgaaagtagccaag 295

                                                                       
Query: 61  aatgtccttgatgttgtgaccctctgtcctccacgtggagagggctgggaccacaggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aatgtccttgatgttgtgaccctctgtcctccacgtggagagggctgggaccacaggtgt 235

                                             
Query: 121 gccgttaacaggtctgttttatgaggtgacaggg 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gccgttaacaggtctgttttatgaggtgacaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)