BAC Information

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BAC

Clone NameMSMg01-377E13
Chromosome11 (Build37)
Map Location 69,215,998 - 69,392,864
singlet/doubletdoublet
Overlap geneJmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030
Upstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88
Downstream geneTrp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377E13.T7 (MSMg01no377_e13.b1)MSMg01-377E13.TJ (MSMg01no377_e13.g1)
ACCAG482402AG482403
length760751
length of high quality
(start - end)		485 (71 - 555)372 (79 - 450)
definitionCHROMAT_FILE: MSMg01no377_e13.b1 PHD_FILE: MSMg01no377_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:24 2005CHROMAT_FILE: MSMg01no377_e13.g1 PHD_FILE: MSMg01no377_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,392,380 - 69,392,864)(69,215,998 - 69,216,369)
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCAGCTCCCGAGGTGTAGGCAAAGTCGTTCCTTCCCGCCTTC
TCGCTCGGAATCGGAGGAGGATGCGGAGAGCCTATCGGAAGGTGGCCCGA
CTCCCGCGAGAGCAAGAAGCCCTGGCGGCGCCTAGCGACCCTAGGCGCTT
GGCTTTGGACACTCGTTCCCTGGTGATTGCTTTAGGTTCGGCTTACATTT
TCCGGAAGAGGAAAGCGGACTCCGGTCTCTGAGCATCCCTGGGAACGGTA
ATGCACTCTAGCCTCGGCTGTTGGTAGCCGGCTCAGCGAGACTTGCCCGA
CCTCTGCCTTCCGGGGGCTTACTCTACAGAATGAAGACGTCGGAGGAGCG
ACTCTTAGCTCCGGATAGCCTCCCTCCTGACCTGGCCCCAGCTCCGGTAC
CCCAAGGTTCCCCAGCGGAGAAAAATACAGACTTTGAACCGGTGCCTCCG
CCATGCGGTGGTGATGACCAACCCCAGCTAGCCACAGATCCCGTGGCTAG
CTTGGTTGTGTCCCAGGAGCTTCAACAAGGGGACTCTGTACCTCTGGAAG
GAGAATTTAATTACTCCAGTGAGTTGAGTCCTGGAATCTAGGAACAAGAT
GTTTTCTGAACATGCGAATCTTCCCGGACAAAAAACATTCCCCCCTACCT
TCAACTTTGATAAACCACCTAACGCGGCCTTTATTTTCTCCCCTCCCTCC
TTTTCCGTTA

NNCCGATGATANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGCATTCATATGCCCACAT
GCTAGAAAACCAATGAATGGCTCAAGTGAAAGATTTAGTCGAGCTTCGAG
TACCTCCCAAATGACTCCCTGGGAGGAGAGAATGTCCAGGTATAAAGGAC
ACGGAATTGATTTTTATGTTTCTTCATTGTTTCCTCTGGTTTTATACTGC
TTAAAATTTTGCATTAAAAAAAGGAAAAAAAAAAAACTAACCATGGATGA
GAAGTAGTCTATAATTCATTCTAATTCTCTTTTGTTTGTTTTGTTGTTTT
TTACAGACCAGACAGGGTTTCTCTGTATACCCCTGGCTGTTCTGGAACTC
ACCAGGCTGGCCTCAAACTCACAAAGATCTACCTGCCTCTGCCTCACTGC
TGGGATTAATGGTGTGTGCCAGTCCTACCTGGCCACCCCTTTCTTTTCTT
TTCCTCTCTCTTCTTTTCTTTTCTTTCCTTTCTTTTTTTTCCCTTCTTCT
TCCCCCTCTCTCTATTTCTTCCTCCTTCTTTCTCCTCTTCTTCCTATTTT
TTTTCTTCTCCTTTCTTCCTTCTATTTCTTTTTCTTCTCTCCTCTCTTCC
CTCCCTAATACTTCAAAATTATCCCCCTTTTCTCTTCCACTCTCTCCTTT
TTCCCCCTTTTTTTTTCCTCCCTCTTTTTCCCTCACCTCTCCCCTCCTCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_e13.b1 MSMg01no377_e13.b1 CHROMAT_FILE:
MSMg01no377_e13.b1 PHD_FILE: MSMg01no377_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:24 2005
         (485 letters)



>mm_chr11_69392180_69393064
          Length = 885

 Score =  915 bits (473), Expect = 0.0
 Identities = 482/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtaggcaaagtcgttccttcccgccttctcgctcggaatcggaggaggatgcggagag 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 685 gtgtaggcaaagtcgttccttcccgccttcccgctcggaatcggaggaggatgcggagag 626

                                                                       
Query: 61  cctatcggaaggtggcccgactcccgcgagagcaagaagccctggcggcgcctagcgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctatcggaaggtggcccgactcccgcgagagcaagaagccctggcggcgcctagcgacc 566

                                                                       
Query: 121 ctaggcgcttggctttggacactcgttccctggtgattgctttaggttcggcttacattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaggcgcttggctttggacactcgttccctggtgattgctttaggttcggcttacattt 506

                                                                       
Query: 181 tccggaagaggaaagcggactccggtctctgagcatccctgggaacggtaatgcactcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccggaagaggaaagcggactccggtctctgagcatccctgggaacggtaatgcactcta 446

                                                                       
Query: 241 gcctcggctgttggtagccggctcagcgagacttgcccgacctctgccttccgggggctt 300
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctcggcagctggtagccggctcagcgagacttgcccgacctctgccttccgggggctt 386

                                                                       
Query: 301 actctacagaatgaagacgtcggaggagcgactcttagctccggatagcctccctcctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actctacagaatgaagacgtcggaggagcgactcttagctccggatagcctccctcctga 326

                                                                       
Query: 361 cctggccccagctccggtaccccaaggttccccagcggagaaaaatacagactttgaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctggccccagctccggtaccccaaggttccccagcggagaaaaatacagactttgaacc 266

                                                                       
Query: 421 ggtgcctccgccatgcggtggtgatgaccaaccccagctagccacagatcccgtggctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgcctccgccatgcggtggtgatgaccaaccccagctagccacagatcccgtggctag 206

                
Query: 481 cttgg 485
           |||||
Sbjct: 205 cttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_e13.g1 MSMg01no377_e13.g1 CHROMAT_FILE:
MSMg01no377_e13.g1 PHD_FILE: MSMg01no377_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:24 2005
         (372 letters)



>mm_chr11_69215798_69216569
          Length = 772

 Score =  719 bits (372), Expect = 0.0
 Identities = 372/372 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggcattcatatgcccacatgctagaaaaccaatgaatggctcaagtgaaagatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggcattcatatgcccacatgctagaaaaccaatgaatggctcaagtgaaagatttag 260

                                                                       
Query: 61  tcgagcttcgagtacctcccaaatgactccctgggaggagagaatgtccaggtataaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgagcttcgagtacctcccaaatgactccctgggaggagagaatgtccaggtataaagg 320

                                                                       
Query: 121 acacggaattgatttttatgtttcttcattgtttcctctggttttatactgcttaaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacggaattgatttttatgtttcttcattgtttcctctggttttatactgcttaaaatt 380

                                                                       
Query: 181 ttgcattaaaaaaaggaaaaaaaaaaaactaaccatggatgagaagtagtctataattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcattaaaaaaaggaaaaaaaaaaaactaaccatggatgagaagtagtctataattca 440

                                                                       
Query: 241 ttctaattctcttttgtttgttttgttgttttttacagaccagacagggtttctctgtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaattctcttttgtttgttttgttgttttttacagaccagacagggtttctctgtat 500

                                                                       
Query: 301 acccctggctgttctggaactcaccaggctggcctcaaactcacaaagatctacctgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccctggctgttctggaactcaccaggctggcctcaaactcacaaagatctacctgcct 560

                       
Query: 361 ctgcctcactgc 372
           ||||||||||||
Sbjct: 561 ctgcctcactgc 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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