Query= MSMg01no378_a15.b1 MSMg01no378_a15.b1 CHROMAT_FILE:
MSMg01no378_a15.b1 PHD_FILE: MSMg01no378_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:26 2005
(572 letters)
>mm_chr11_98588756_98589727
Length = 972
Score = 1042 bits (539), Expect = 0.0
Identities = 562/571 (98%), Gaps = 5/571 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgatttttctcgctaccgcctcccacaattgatttgggggtgggtgggtgctg 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 626 gaattcctgatttttct-gctaccgcctcccacaattgatttgggggtgggtgggtgttg 568
Query: 65 ataatcaaacctaggacctgcagatgctaggcaagtgttctacctttgagc---tataat 121
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 ataatcaaacctaggacctgcagatgctaggcaagtgttctacctttgagctattataat 508
Query: 122 ccctatcggggtgtttgcaaatgttaatgtttgtcacacaatggtaagtcctggggattt 181
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccctctctgggtgtttgcaaatgttaatgtttgtcacacaatggtaagtcctggggattt 448
Query: 182 gatcccagtacacaagggaagttgaaggcaatgcagactatcgctaatcgttgagcgatg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gatcccagtacacaagggaagttgaaggcaatgcagactatcgctaatcgttgagcgatg 388
Query: 242 gggtttatggtatgattagggcagagtatagaaatgaagagaggatatggaagtgatgcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gggtttatggtatgattagggcagagtatagaaatgaagagaggatatggaagtgatgcc 328
Query: 302 tagtcctgcctgagcaatcacagaaggctttctaaaggaagtgatgtttaaaccaaggtc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tagtcctgcctgagcaatcacagaaggctttctaaaggaagtgatgtttaaaccaaggtc 268
Query: 362 tctatggtgagtagaagttagccacacagatgaatgagaatgaagagcagagagaggaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctatggtgagtagaagttagccacacagatgaatgagaatgaagagcagagagaggaaa 208
Query: 422 ttataattctacacaggctgggctggacaaattataagttatccactactgaaagtgagg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttataattctacacaggctgggctggacaaattataagttatccactactgaaagtgagg 148
Query: 482 gctgcagatacagttcattggtaaagtgtttgcttagcagggacaaggccctggatttga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gctgcagatacagttcattggtaaagtgtttgcttagcagggacaaggccctggatttga 88
Query: 542 tccccggcaccacaaaaaaagctgaaggata 572
||||||||||||| |||||| ||||||||||
Sbjct: 87 tccccggcaccac-aaaaaacctgaaggata 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_a15.g1 MSMg01no378_a15.g1 CHROMAT_FILE:
MSMg01no378_a15.g1 PHD_FILE: MSMg01no378_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:26 2005
(490 letters)
>mm_chr11_98395715_98396604
Length = 890
Score = 775 bits (401), Expect = 0.0
Identities = 427/443 (96%), Gaps = 13/443 (2%)
Strand = Plus / Plus
Query: 1 aatgcatagtttttaaggaat------------agcagcacatgcctttagtcccagcat 48
||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 190 aatgcatagtttttaaggaatctagctgggcatagcagcacatgcctttagtcccag-at 248
Query: 49 ttgcaagatagagaggcaggaggatctctgtgagttctgggccagcctggtctacacagt 108
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 249 ttgcaagatagagaggcaggaggatccctgtgagttctgggccagcctggtctacacagt 308
Query: 109 gagttccaggacagctagggctatacagagagatctcgtcttaaaacaaacttcattgta 168
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gagttccaggacagctagagctatacagagagatctcgtcttaaaacaaacttcattgta 368
Query: 169 gtgtgtgtacacattgggggtgctcatgctgcaacatgtatgtccgggtcagagaacaac 228
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 369 gtgtgtgtacacattgggggtgctcatgctgcaacatgtatgtctgggtcagagaacaac 428
Query: 229 tttgaagaactggtcctctcccttccacctttacggggttctgggcatggcaagcacctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttgaagaactggtcctctcccttccacctttacggggttctgggcatggcaagcacctt 488
Query: 289 tacctgctgaggcgtcttgctagtctcccagtaagtaatttttgaatgaagactgaattc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tacctgctgaggcgtcttgctagtctcccagtaagtaatttttgaatgaagactgaattc 548
Query: 349 agttctgagttttgaatcatagtgtataataagcactgtctcacacgactaatcaaaaca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agttctgagttttgaatcatagtgtataataagcactgtctcacacgactaatcaaaaca 608
Query: 409 aaatatcagaaagctttctctag 431
|||||||||||||||||||||||
Sbjct: 609 aaatatcagaaagctttctctag 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
